KEGG   PATHWAY: har00630
Entry
har00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Herminiimonas arsenicoxydans
Class
Metabolism; Carbohydrate metabolism
Pathway map
har00630  Glyoxylate and dicarboxylate metabolism
har00630

Module
har_M00012  Glyoxylate cycle [PATH:har00630]
Other DBs
GO: 0046487 0043648
Organism
Herminiimonas arsenicoxydans [GN:har]
Gene
HEAR1689  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
HEAR0921  acsA; Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme) [KO:K01895] [EC:6.2.1.1]
HEAR1688  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
HEAR1780  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HEAR1773  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
HEAR1783  acnA; Aconitate hydratase (Citrate hydro-lyase) (Aconitase) [KO:K01681] [EC:4.2.1.3]
HEAR0577  phbA; acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase) [KO:K00626] [EC:2.3.1.9]
HEAR2345  phbB2; Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
HEAR0578  phbB1; Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
HEAR0284  glcD; Glycolate oxidase subunit glcD [KO:K00104] [EC:1.1.99.14]
HEAR0285  glcE; Glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
HEAR0286  glcF; Glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
HEAR1200  katA; catalase (hydroperoxidase II) [KO:K03781] [EC:1.11.1.6]
HEAR0804  putative glyoxylate reductase (Glycolate reductase) [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
HEAR2086  Putative phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
HEAR0201  Putative Phosphoglycolate phosphatase (PGP) (gph) [KO:K01091] [EC:3.1.3.18]
HEAR2731  sgaA; Serine--glyoxylate aminotransferase (SGAT) [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
HEAR2380  glyA; Serine hydroxymethyltransferase (Serine methylase) (SHMT) [KO:K00600] [EC:2.1.2.1]
HEAR3352  Putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HEAR1770  odhL; Dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex) (Dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
HEAR0748  lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) [KO:K00382] [EC:1.8.1.4]
HEAR0332  gcl; glyoxylate carboligase (Tartronate-semialdehyde synthase) [KO:K01608] [EC:4.1.1.47]
HEAR0333  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
HEAR0334  glxR; 2-hydroxy-3-oxopropionate reductase (Tartronate semialdehyde reductase) (TSAR) [KO:K00042] [EC:1.1.1.60]
HEAR0217  Putative 2-hydroxy-3-oxopropionate reductase glxR-like (Tartronate semialdehyde reductase) (TSAR) [KO:K00042] [EC:1.1.1.60]
HEAR0335  ttuD; putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
HEAR3330  Putative fumarate dehydratase [KO:K03779] [EC:4.2.1.32]
HEAR3332  Putative tartrate dehydratase [KO:K03780] [EC:4.2.1.32]
HEAR3229  ttuC; Tartrate dehydrogenase/decarboxylase (TDH) (D-malate dehydrogenase [decarboxylating]) [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
HEAR1087  eda; bifunctional KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate aldolase (2-keto-4-hydroxyglutarate aldolase) (KHG-aldolase); 2-dehydro-3-deoxyphosphogluconate aldolase (Phospho-2-dehydro-3-deoxygluconate aldolase) (Phospho-2-keto-3-deoxygluconate aldolase) (2-keto-3-deoxy-6-phosphogluconate aldolase) (KDPG-aldolase)] [KO:K01625] [EC:4.1.2.14 4.1.3.42]
HEAR3442  fdh; Formate dehydrogenase (NAD-dependent formate dehydrogenase) (FDH) [KO:K00122] [EC:1.17.1.9]
HEAR3430  fdsD; NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
HEAR3432  fdsA; NAD-dependent formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
HEAR1412  putative formate dehydrogenase subunit A [KO:K00123] [EC:1.17.1.9]
HEAR0358  fdhA1; Formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
HEAR0357  NADH dehydrogenase (Quinone) [KO:K22515] [EC:1.17.1.9]
HEAR1413  fdhB; formate dehydrogenase iron-sulfur subunit [KO:K00124]
HEAR3433  fdsB; NAD-dependent formate dehydrogenase beta subunit [KO:K00124]
HEAR3435  fdsG; NAD-dependent formate dehydrogenase gamma subunit [KO:K00127]
HEAR1415  putative formate dehydrogenase subunit C [KO:K00127]
HEAR0993  purU; Formyltetrahydrofolate deformylase (Formyl-FH(4) hydrolase) [KO:K01433] [EC:3.5.1.10]
HEAR1452  fmdA; Formamidase (Formamide amidohydrolase) [KO:K01455] [EC:3.5.1.49]
HEAR0353  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
HEAR0354  frc1; Formyl-coenzyme A transferase (Formyl-CoA transferase) [KO:K07749] [EC:2.8.3.16]
HEAR0355  frc2; Formyl-coenzyme A transferase (Formyl-CoA transferase) [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
har00010  Glycolysis / Gluconeogenesis
har00020  Citrate cycle (TCA cycle)
har00030  Pentose phosphate pathway
har00071  Fatty acid degradation
har00230  Purine metabolism
har00250  Alanine, aspartate and glutamate metabolism
har00260  Glycine, serine and threonine metabolism
har00620  Pyruvate metabolism
har00710  Carbon fixation by Calvin cycle
har00750  Vitamin B6 metabolism
har00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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