KEGG   PATHWAY: hash00020
Entry
hash00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Halomonas sp. SH5A2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hash00020  Citrate cycle (TCA cycle)
hash00020

Module
hash_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hash00020]
hash_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hash00020]
hash_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hash00020]
hash_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hash00020]
Other DBs
GO: 0006099
Organism
Halomonas sp. SH5A2 [GN:hash]
Gene
HXW73_11965  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HXW73_11345  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
HXW73_14955  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
HXW73_09605  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HXW73_05495  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HXW73_13585  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
HXW73_11940  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HXW73_11935  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HXW73_11930  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HXW73_11920  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HXW73_11925  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HXW73_11950  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HXW73_11945  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HXW73_11960  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HXW73_11955  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HXW73_08625  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HXW73_09755  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HXW73_05860  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HXW73_05820  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HXW73_14320  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HXW73_14315  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hash00010  Glycolysis / Gluconeogenesis
hash00053  Ascorbate and aldarate metabolism
hash00061  Fatty acid biosynthesis
hash00071  Fatty acid degradation
hash00190  Oxidative phosphorylation
hash00220  Arginine biosynthesis
hash00250  Alanine, aspartate and glutamate metabolism
hash00280  Valine, leucine and isoleucine degradation
hash00350  Tyrosine metabolism
hash00470  D-Amino acid metabolism
hash00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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