KEGG   PATHWAY: hdl00630
Entry
hdl00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Halobacterium sp. DL1
Class
Metabolism; Carbohydrate metabolism
Pathway map
hdl00630  Glyoxylate and dicarboxylate metabolism
hdl00630

Module
hdl_M00012  Glyoxylate cycle [PATH:hdl00630]
hdl_M00621  Glycine cleavage system [PATH:hdl00630]
hdl_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:hdl00630]
hdl_M00968  Pentose bisphosphate pathway (nucleoside degradation), archaea, nucleoside/NMP => 3-PGA/glycerone phosphate [PATH:hdl00630]
Other DBs
GO: 0046487 0043648
Organism
Halobacterium sp. DL1 [GN:hdl]
Gene
HALDL1_15305  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
HALDL1_06555  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
HALDL1_07450  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
HALDL1_16470  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HALDL1_12095  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HALDL1_15410  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HALDL1_02930  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HALDL1_00170  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HALDL1_08995  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
HALDL1_11435  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
HALDL1_07815  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
HALDL1_07555  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
HALDL1_10365  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HALDL1_10140  acyl dehydratase [KO:K17865] [EC:4.2.1.55]
HALDL1_04620  hypothetical protein [KO:K05606] [EC:5.1.99.1]
HALDL1_06515  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
HALDL1_12615  carbamoyl phosphate synthase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
HALDL1_04455  carbamoyl phosphate synthase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
HALDL1_12630  methylmalonyl-CoA carboxyltransferase [KO:K19312] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
HALDL1_12625  acc operon protein [KO:K22568] [EC:6.4.1.2 6.4.1.3]
HALDL1_07535  methylmalonyl-CoA mutase [KO:K01849] [EC:5.4.99.2]
HALDL1_06525  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
HALDL1_07445  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
HALDL1_15310  malate synthase [KO:K19282] [EC:4.1.3.24 3.1.2.30]
HALDL1_12350  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
HALDL1_13845  3-phosphoglycerate kinase [KO:K01091] [EC:3.1.3.18]
HALDL1_07945  phosphoglycolate phosphatase [KO:K22223] [EC:3.1.3.18]
HALDL1_12465  alanine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
HALDL1_06165  glutamate synthase [KO:K00284] [EC:1.4.7.1]
HALDL1_15330  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
HALDL1_12245  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
HALDL1_12800  glycine dehydrogenase subunit 1 [KO:K00282] [EC:1.4.4.2]
HALDL1_12795  glycine dehydrogenase subunit 2 [KO:K00283] [EC:1.4.4.2]
HALDL1_03280  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
HALDL1_12810  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
HALDL1_04660  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HALDL1_02400  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HALDL1_12805  glycine cleavage system protein H [KO:K02437]
HALDL1_07765  hydrolase [KO:K26210] [EC:3.1.3.109]
HALDL1_07760  fructose-bisphosphate aldolase [KO:K01636] [EC:4.1.2.-]
HALDL1_14705  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
hdl00010  Glycolysis / Gluconeogenesis
hdl00020  Citrate cycle (TCA cycle)
hdl00030  Pentose phosphate pathway
hdl00053  Ascorbate and aldarate metabolism
hdl00071  Fatty acid degradation
hdl00230  Purine metabolism
hdl00250  Alanine, aspartate and glutamate metabolism
hdl00260  Glycine, serine and threonine metabolism
hdl00620  Pyruvate metabolism
hdl00710  Carbon fixation by Calvin cycle
hdl00750  Vitamin B6 metabolism
hdl00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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