KEGG   PATHWAY: hol00020
Entry
hol00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vreelandella olivaria
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hol00020  Citrate cycle (TCA cycle)
hol00020

Module
hol_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hol00020]
hol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hol00020]
hol_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hol00020]
hol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hol00020]
Other DBs
GO: 0006099
Organism
Vreelandella olivaria [GN:hol]
Gene
HORIV_18680  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
HORIV_44170  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
HORIV_57670  hypothetical protein [KO:K27802] [EC:4.2.1.3 4.2.1.99]
HORIV_57660  hypothetical protein [KO:K27802] [EC:4.2.1.3 4.2.1.99]
HORIV_32630  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HORIV_19600  hypothetical protein [KO:K00031] [EC:1.1.1.42]
HORIV_52240  hypothetical protein [KO:K00030] [EC:1.1.1.41]
HORIV_18720  hypothetical protein [KO:K00164] [EC:1.2.4.2]
HORIV_18760  hypothetical protein [KO:K00658] [EC:2.3.1.61]
HORIV_18770  lpdG; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HORIV_18790  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
HORIV_18780  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
HORIV_18700  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HORIV_18710  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HORIV_18690  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
HORIV_62650  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
HORIV_62640  succinate dehydrogenase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
HORIV_62630  frdC; fumarate reductase subunit C [KO:K00246]
HORIV_62620  frdD; fumarate reductase subunit D [KO:K00247]
HORIV_37000  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
HORIV_32160  fumC1; fumarate hydratase class II 1 [KO:K01679] [EC:4.2.1.2]
HORIV_22350  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HORIV_21930  hypothetical protein [KO:K01610] [EC:4.1.1.49]
HORIV_55060  hypothetical protein [KO:K00163] [EC:1.2.4.1]
HORIV_55070  hypothetical protein [KO:K00163] [EC:1.2.4.1]
HORIV_55030  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hol00010  Glycolysis / Gluconeogenesis
hol00053  Ascorbate and aldarate metabolism
hol00061  Fatty acid biosynthesis
hol00071  Fatty acid degradation
hol00190  Oxidative phosphorylation
hol00220  Arginine biosynthesis
hol00250  Alanine, aspartate and glutamate metabolism
hol00280  Valine, leucine and isoleucine degradation
hol00350  Tyrosine metabolism
hol00470  D-Amino acid metabolism
hol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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