KEGG   PATHWAY: idc00630
Entry
idc00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Ideonella dechloratans
Class
Metabolism; Carbohydrate metabolism
Pathway map
idc00630  Glyoxylate and dicarboxylate metabolism
idc00630

Module
idc_M00012  Glyoxylate cycle [PATH:idc00630]
idc_M00621  Glycine cleavage system [PATH:idc00630]
Other DBs
GO: 0046487 0043648
Organism
Ideonella dechloratans [GN:idc]
Gene
LRM40_09545  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
LRM40_09095  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
LRM40_09105  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
LRM40_11440  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LRM40_17755  malate synthase G [KO:K01638] [EC:2.3.3.9]
LRM40_07885  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LRM40_07920  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LRM40_09380  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LRM40_07860  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LRM40_02990  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
LRM40_09255  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
LRM40_07960  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
LRM40_07955  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
LRM40_07940  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
LRM40_15895  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
LRM40_15890  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
LRM40_15875  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
LRM40_09175  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
LRM40_00250  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
LRM40_05525  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
LRM40_15670  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
LRM40_00280  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
LRM40_00275  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
LRM40_07090  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LRM40_07240  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LRM40_07550  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LRM40_09575  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LRM40_09615  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LRM40_06140  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LRM40_10070  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
LRM40_10060  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
LRM40_09220  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LRM40_11175  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LRM40_10065  gcvH; glycine cleavage system protein GcvH [KO:K02437]
LRM40_13485  glycerate kinase [KO:K11529] [EC:2.7.1.165]
LRM40_19835  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LRM40_05065  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LRM40_04665  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
LRM40_04660  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
LRM40_11625  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
LRM40_04655  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
LRM40_11620  fdxH; formate dehydrogenase subunit beta [KO:K00124]
LRM40_04650  formate dehydrogenase subunit gamma [KO:K00127]
LRM40_11615  formate dehydrogenase subunit gamma [KO:K00127]
LRM40_12575  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
LRM40_01710  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
LRM40_05905  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
idc00010  Glycolysis / Gluconeogenesis
idc00020  Citrate cycle (TCA cycle)
idc00030  Pentose phosphate pathway
idc00053  Ascorbate and aldarate metabolism
idc00071  Fatty acid degradation
idc00230  Purine metabolism
idc00250  Alanine, aspartate and glutamate metabolism
idc00260  Glycine, serine and threonine metabolism
idc00620  Pyruvate metabolism
idc00710  Carbon fixation by Calvin cycle
idc00750  Vitamin B6 metabolism
idc00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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