KEGG   PATHWAY: kam00020
Entry
kam00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kangiella aquimarina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kam00020  Citrate cycle (TCA cycle)
kam00020

Module
kam_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kam00020]
kam_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kam00020]
kam_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kam00020]
kam_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kam00020]
Other DBs
GO: 0006099
Organism
Kangiella aquimarina [GN:kam]
Gene
SR900_06980  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SR900_06600  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
SR900_03930  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
SR900_09305  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SR900_09025  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SR900_07005  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SR900_07010  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
SR900_11060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SR900_07020  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
SR900_07015  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SR900_06995  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SR900_07000  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SR900_06985  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
SR900_06990  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
SR900_06590  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SR900_05900  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SR900_02765  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SR900_09835  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SR900_11070  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
SR900_11065  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kam00010  Glycolysis / Gluconeogenesis
kam00061  Fatty acid biosynthesis
kam00071  Fatty acid degradation
kam00190  Oxidative phosphorylation
kam00220  Arginine biosynthesis
kam00250  Alanine, aspartate and glutamate metabolism
kam00280  Valine, leucine and isoleucine degradation
kam00350  Tyrosine metabolism
kam00470  D-Amino acid metabolism
kam00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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