KEGG   PATHWAY: lap00630
Entry
lap00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Labrenzia sp. CP4
Class
Metabolism; Carbohydrate metabolism
Pathway map
lap00630  Glyoxylate and dicarboxylate metabolism
lap00630

Module
lap_M00621  Glycine cleavage system [PATH:lap00630]
lap_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:lap00630]
Other DBs
GO: 0046487 0043648
Organism
Labrenzia sp. CP4 [GN:lap]
Gene
ACP90_00985  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
ACP90_03090  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
ACP90_02520  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
ACP90_22085  malate synthase [KO:K01638] [EC:2.3.3.9]
ACP90_25650  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ACP90_00215  citrate synthase [KO:K01647] [EC:2.3.3.1]
ACP90_00220  citrate synthase [KO:K01647] [EC:2.3.3.1]
ACP90_13920  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ACP90_02310  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ACP90_02315  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ACP90_00025  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACP90_01510  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACP90_21650  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACP90_01505  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
ACP90_05605  phosphate acetyltransferase [KO:K17865] [EC:4.2.1.55]
ACP90_23150  acyl dehydratase [KO:K17865] [EC:4.2.1.55]
ACP90_02770  crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
ACP90_13755  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
ACP90_02775  protein meaA [KO:K14447] [EC:5.4.99.63]
ACP90_03340  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
ACP90_02630  dehydratase [KO:K14449] [EC:4.2.1.148]
ACP90_14745  aldolase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
ACP90_12920  acetyl-CoA carboxylase [KO:K01965] [EC:6.4.1.3]
ACP90_12900  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
ACP90_11655  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
ACP90_11660  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
ACP90_23375  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
ACP90_23370  2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
ACP90_23355  2-hydroxy-acid oxidase [KO:K11473] [EC:1.1.99.14]
ACP90_00785  2-hydroxyacid dehydrogenase [KO:K00015] [EC:1.1.1.26]
ACP90_05235  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
ACP90_17590  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
ACP90_12855  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
ACP90_12925  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
ACP90_18875  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
ACP90_10925  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
ACP90_26790  aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
ACP90_23570  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
ACP90_13575  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
ACP90_23775  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
ACP90_23785  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
ACP90_05860  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
ACP90_21490  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
ACP90_18020  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
ACP90_22870  glycine dehydrogenase [KO:K00282] [EC:1.4.4.2]
ACP90_22865  glycine dehydrogenase [KO:K00283] [EC:1.4.4.2]
ACP90_22885  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
ACP90_25605  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACP90_14370  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACP90_22880  glycine cleavage system protein H [KO:K02437]
ACP90_05615  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
ACP90_03265  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
ACP90_08310  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
ACP90_08300  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
ACP90_08305  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
ACP90_09915  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ACP90_10745  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
ACP90_21105  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
ACP90_05950  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
ACP90_10755  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
ACP90_21110  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
ACP90_05955  formate dehydrogenase [KO:K00124]
ACP90_10760  formate dehydrogenase [KO:K00124]
ACP90_05960  formate dehydrogenase [KO:K00127]
ACP90_10765  hypothetical protein [KO:K00127]
ACP90_13950  esterase [KO:K01432] [EC:3.5.1.9]
ACP90_23990  kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
ACP90_00065  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
ACP90_20600  formamidase [KO:K01455] [EC:3.5.1.49]
ACP90_06005  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
ACP90_26785  formiminoglutamase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
lap00010  Glycolysis / Gluconeogenesis
lap00020  Citrate cycle (TCA cycle)
lap00030  Pentose phosphate pathway
lap00053  Ascorbate and aldarate metabolism
lap00071  Fatty acid degradation
lap00230  Purine metabolism
lap00250  Alanine, aspartate and glutamate metabolism
lap00260  Glycine, serine and threonine metabolism
lap00620  Pyruvate metabolism
lap00710  Carbon fixation by Calvin cycle
lap00750  Vitamin B6 metabolism
lap00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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