KEGG   PATHWAY: ljr00020
Entry
ljr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Legionella jordanis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ljr00020  Citrate cycle (TCA cycle)
ljr00020

Module
ljr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ljr00020]
ljr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ljr00020]
ljr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ljr00020]
ljr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ljr00020]
Other DBs
GO: 0006099
Organism
Legionella jordanis [GN:ljr]
Gene
NCTC11533_01244  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
NCTC11533_01460  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
NCTC11533_01636  acnA; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NCTC11533_01878  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NCTC11533_02611  sucA; 2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
NCTC11533_02610  sucB; dihydrolipoamide succinyltransferase subunit E2 [KO:K00658] [EC:2.3.1.61]
NCTC11533_01231  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC11533_00991  porA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NCTC11533_00992  2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NCTC11533_02608  sucD_2; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC11533_02609  sucC; succinyl CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
NCTC11533_02613  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC11533_02612  sdhB; succinate dehydrogenase, iron sulfur protein [KO:K00240] [EC:1.3.5.1]
NCTC11533_02615  sdhC; succinate dehydrogenase cytochrome b556 subunit C [KO:K00241]
NCTC11533_02614  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
NCTC11533_02822  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NCTC11533_00430  mdh_1; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC11533_02631  accC_2; acetyl-CoA carboxylase [KO:K01959] [EC:6.4.1.1]
NCTC11533_00441  cfiA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
NCTC11533_01229  aceE; pyruvate dehydrogenase E1 component oxidoreductase protein AceE [KO:K00163] [EC:1.2.4.1]
NCTC11533_01230  aceF; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ljr00010  Glycolysis / Gluconeogenesis
ljr00053  Ascorbate and aldarate metabolism
ljr00061  Fatty acid biosynthesis
ljr00071  Fatty acid degradation
ljr00190  Oxidative phosphorylation
ljr00220  Arginine biosynthesis
ljr00250  Alanine, aspartate and glutamate metabolism
ljr00280  Valine, leucine and isoleucine degradation
ljr00350  Tyrosine metabolism
ljr00470  D-Amino acid metabolism
ljr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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