KEGG   PATHWAY: lmb00020
Entry
lmb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lysobacter maris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lmb00020  Citrate cycle (TCA cycle)
lmb00020

Module
lmb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lmb00020]
lmb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lmb00020]
lmb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lmb00020]
lmb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lmb00020]
lmb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lmb00020]
Other DBs
GO: 0006099
Organism
Lysobacter maris [GN:lmb]
Gene
C9I47_2701  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
C9I47_2297  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
C9I47_1547  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
C9I47_1548  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C9I47_0120  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C9I47_1214  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
C9I47_1464  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
C9I47_1463  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
C9I47_1462  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C9I47_2887  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C9I47_2567  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
C9I47_2568  malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C9I47_1726  fumarate reductase [KO:K00239] [EC:1.3.5.1]
C9I47_1725  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
C9I47_1728  succinate dehydrogenase [KO:K00241]
C9I47_1727  succinate dehydrogenase [KO:K00242]
C9I47_1746  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C9I47_1469  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
C9I47_2301  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C9I47_2583  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
C9I47_2962  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
C9I47_2890  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lmb00010  Glycolysis / Gluconeogenesis
lmb00053  Ascorbate and aldarate metabolism
lmb00061  Fatty acid biosynthesis
lmb00071  Fatty acid degradation
lmb00190  Oxidative phosphorylation
lmb00220  Arginine biosynthesis
lmb00250  Alanine, aspartate and glutamate metabolism
lmb00280  Valine, leucine and isoleucine degradation
lmb00350  Tyrosine metabolism
lmb00470  D-Amino acid metabolism
lmb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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