KEGG   PATHWAY: lpic00270
Entry
lpic00270                   Pathway                                
Name
Cysteine and methionine metabolism - Lytechinus pictus (painted urchin)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
lpic00270  Cysteine and methionine metabolism
lpic00270

Module
lpic_M00035  Methionine degradation [PATH:lpic00270]
lpic_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:lpic00270]
Other DBs
GO: 0006534 0006555
Organism
Lytechinus pictus (painted urchin) [GN:lpic]
Gene
129264976  uncharacterized protein LOC129264976 [KO:K01738] [EC:2.5.1.47]
129271046  cystathionine gamma-lyase-like [KO:K01758] [EC:4.4.1.1]
129277182  kynurenine aminotransferase-like isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
129266478  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
129266925  LOW QUALITY PROTEIN: cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
129262595  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
129264145  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
129265678  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
129258483  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
129258484  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
129258534  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
129259077  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
129259157  betaine--homocysteine S-methyltransferase 1-like isoform X1 [KO:K00544] [EC:2.1.1.5]
129259605  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
129281783  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
129260832  methionine adenosyltransferase 2 subunit beta-like isoform X1 [KO:K00789] [EC:2.5.1.6]
129259050  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
129276155  spermidine synthase-like [KO:K00797] [EC:2.5.1.16]
129276527  spermidine synthase-like [KO:K00797] [EC:2.5.1.16]
129282048  methylthioribose kinase-like [KO:K00899] [EC:2.7.1.100]
129271758  S-methyl-5'-thioadenosine phosphorylase-like [KO:K00772] [EC:2.4.2.28]
129271763  LOW QUALITY PROTEIN: S-methyl-5'-thioadenosine phosphorylase-like [KO:K00772] [EC:2.4.2.28]
129262981  methylthioribose-1-phosphate isomerase-like [KO:K08963] [EC:5.3.1.23]
129263839  methylthioribose-1-phosphate isomerase-like [KO:K08963] [EC:5.3.1.23]
129264345  enolase-phosphatase E1-like [KO:K09880] [EC:3.1.3.77]
129263161  acireductone dioxygenase-like [KO:K08967] [EC:1.13.11.53 1.13.11.54]
129263263  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
129263534  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
129263541  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
129263666  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
129264872  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
129265454  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
129282198  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
129283305  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
129283548  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
129283549  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
129278076  DNA (cytosine-5)-methyltransferase PliMCI-like [KO:K00558] [EC:2.1.1.37]
129254105  adenosylhomocysteinase A-like [KO:K01251] [EC:3.13.2.1]
129254129  adenosylhomocysteinase-like [KO:K01251] [EC:3.13.2.1]
129255449  S-adenosylhomocysteine hydrolase-like protein 1 [KO:K01251] [EC:3.13.2.1]
129267704  branched-chain-amino-acid aminotransferase, cytosolic-like [KO:K00826] [EC:2.6.1.42]
129253875  alanine--glyoxylate aminotransferase 2, mitochondrial-like [KO:K00827] [EC:2.6.1.44 2.6.1.40]
129261824  glutamate--cysteine ligase catalytic subunit-like [KO:K11204] [EC:6.3.2.2]
129277400  glutamate--cysteine ligase regulatory subunit-like [KO:K11205]
129253837  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
129253838  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
129253839  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
129269068  LOW QUALITY PROTEIN: glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
129270014  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
129257346  cysteine dioxygenase type 1-like [KO:K00456] [EC:1.13.11.20]
129273223  aspartate aminotransferase, cytoplasmic-like [KO:K14454] [EC:2.6.1.1]
129254484  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
129282094  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
129269361  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
129269763  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
129270019  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
129270020  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
129270787  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
129271457  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
129271458  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
129282975  L-lactate dehydrogenase-like [KO:K00016] [EC:1.1.1.27]
129283066  L-lactate dehydrogenase-like isoform X1 [KO:K00016] [EC:1.1.1.27]
129278461  LOW QUALITY PROTEIN: uncharacterized protein LOC129278461 [KO:K05396] [EC:4.4.1.15]
129278765  uncharacterized protein LOC129278765 [KO:K05396] [EC:4.4.1.15]
129279614  uncharacterized protein LOC129279614 [KO:K05396] [EC:4.4.1.15]
129279632  uncharacterized protein LOC129279632 [KO:K05396] [EC:4.4.1.15]
129257828  uncharacterized protein LOC129257828 [KO:K05396] [EC:4.4.1.15]
129277655  uncharacterized protein LOC129277655 [KO:K22207] [EC:4.4.1.28]
129277813  uncharacterized protein LOC129277813 isoform X1 [KO:K22207] [EC:4.4.1.28]
129265055  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
129254414  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
129254443  L-serine dehydratase/L-threonine deaminase-like isoform X1 [KO:K17989] [EC:4.3.1.17 4.3.1.19]
129273056  L-serine dehydratase/L-threonine deaminase-like isoform X1 [KO:K17989] [EC:4.3.1.17 4.3.1.19]
129255802  phosphoserine aminotransferase-like [KO:K00831] [EC:2.6.1.52]
129257654  phosphoserine aminotransferase-like [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
lpic00010  Glycolysis / Gluconeogenesis
lpic00250  Alanine, aspartate and glutamate metabolism
lpic00260  Glycine, serine and threonine metabolism
lpic00290  Valine, leucine and isoleucine biosynthesis
lpic00430  Taurine and hypotaurine metabolism
lpic00480  Glutathione metabolism
lpic00620  Pyruvate metabolism
lpic00640  Propanoate metabolism
lpic00770  Pantothenate and CoA biosynthesis
lpic00900  Terpenoid backbone biosynthesis
lpic00920  Sulfur metabolism
KO pathway
ko00270   
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