KEGG   PATHWAY: mard00230
Entry
mard00230                   Pathway                                
Name
Purine metabolism - Marinomonas arctica
Class
Metabolism; Nucleotide metabolism
Pathway map
mard00230  Purine metabolism
mard00230

Module
mard_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:mard00230]
mard_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:mard00230]
mard_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:mard00230]
mard_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:mard00230]
mard_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:mard00230]
mard_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:mard00230]
mard_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:mard00230]
Other DBs
GO: 0006163 0042278
Organism
Marinomonas arctica [GN:mard]
Gene
IBG28_15600  NUDIX domain-containing protein [KO:K01515] [EC:3.6.1.13 3.6.1.-]
IBG28_10435  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
IBG28_17005  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
IBG28_04655  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
IBG28_09565  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
IBG28_07040  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
IBG28_07810  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
IBG28_18050  purL; phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
IBG28_07815  purM; phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
IBG28_04180  purK; 5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
IBG28_04185  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
IBG28_10505  purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
IBG28_14325  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
IBG28_07045  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
IBG28_09950  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
IBG28_00250  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
IBG28_20415  bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
IBG28_05325  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
IBG28_06275  inosine/guanosine kinase [KO:K00892] [EC:2.7.1.73]
IBG28_13085  pyrimidine/purine nucleoside phosphorylase [KO:K09913] [EC:2.4.2.1 2.4.2.2]
IBG28_17060  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
IBG28_12985  hypoxanthine-guanine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
IBG28_19615  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
IBG28_05575  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
IBG28_09885  yjjX; inosine/xanthosine triphosphatase [KO:K01529] [EC:3.6.1.73]
IBG28_20320  rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
IBG28_17950  gpt; xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
IBG28_12400  xdhA; xanthine dehydrogenase small subunit [KO:K13481] [EC:1.17.1.4]
IBG28_12395  xdhB; xanthine dehydrogenase molybdopterin binding subunit [KO:K13482] [EC:1.17.1.4]
IBG28_19610  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
IBG28_13200  guaD; guanine deaminase [KO:K01487] [EC:3.5.4.3]
IBG28_20580  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
IBG28_07000  nrdA; ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
IBG28_06995  nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
IBG28_07120  deoxyguanosinetriphosphate triphosphohydrolase family protein [KO:K01129] [EC:3.1.5.1]
IBG28_20590  bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
IBG28_17985  Ppx/GppA family phosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
IBG28_05065  relA; GTP diphosphokinase [KO:K00951] [EC:2.7.6.5]
IBG28_11980  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
IBG28_17815  LOG family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
IBG28_08560  adenosine deaminase [KO:K21053] [EC:3.5.4.2]
IBG28_19200  bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
IBG28_05080  adk; adenylate kinase [KO:K00939] [EC:2.7.4.3]
IBG28_05070  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
IBG28_14610  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
IBG28_15835  symmetrical bis(5'-nucleosyl)-tetraphosphatase [KO:K01525] [EC:3.6.1.41]
IBG28_13335  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
IBG28_10300  cysN; sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
IBG28_10305  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
IBG28_12455  hpxO; FAD-dependent urate hydroxylase HpxO [KO:K16839] [EC:1.14.13.113]
IBG28_12450  uraH; hydroxyisourate hydrolase [KO:K07127] [EC:3.5.2.17]
IBG28_12445  uraD; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [KO:K13485] [EC:4.1.1.97]
IBG28_02105  aspartate/glutamate racemase family protein [KO:K16841] [EC:5.1.99.3]
IBG28_02100  puuE; allantoinase PuuE [KO:K16842] [EC:3.5.2.5]
IBG28_02020  allantoate amidohydrolase [KO:K02083] [EC:3.5.3.9]
IBG28_02015  alanine--glyoxylate aminotransferase family protein [KO:K00839] [EC:2.6.1.112]
IBG28_16305  ureC; urease subunit alpha [KO:K01428] [EC:3.5.1.5]
IBG28_16310  urease subunit beta [KO:K01429] [EC:3.5.1.5]
IBG28_16315  urease subunit gamma [KO:K01430] [EC:3.5.1.5]
IBG28_02005  gamma-glutamyltransferase [KO:K22602] [EC:3.5.1.126]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
mard00030  Pentose phosphate pathway
mard00220  Arginine biosynthesis
mard00250  Alanine, aspartate and glutamate metabolism
mard00260  Glycine, serine and threonine metabolism
mard00340  Histidine metabolism
mard00630  Glyoxylate and dicarboxylate metabolism
mard00730  Thiamine metabolism
mard00740  Riboflavin metabolism
mard00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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