KEGG   PATHWAY: mcun00020
Entry
mcun00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Moraxella cuniculi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mcun00020  Citrate cycle (TCA cycle)
mcun00020

Module
mcun_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mcun00020]
mcun_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mcun00020]
mcun_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mcun00020]
mcun_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mcun00020]
mcun_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mcun00020]
Other DBs
GO: 0006099
Organism
Moraxella cuniculi [GN:mcun]
Gene
NCTC10297_00470  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
NCTC10297_00852  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
NCTC10297_00035  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCTC10297_00016  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCTC10297_00457  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NCTC10297_00456  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
NCTC10297_00455  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC10297_01333  scpC; Propionyl-CoA:succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
NCTC10297_00464  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC10297_00463  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC10297_00466  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
NCTC10297_00465  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
NCTC10297_00660  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
NCTC10297_01265  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NCTC10297_00713  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC10297_01985  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NCTC10297_01215  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
NCTC10297_01603  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NCTC10297_01602  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mcun00010  Glycolysis / Gluconeogenesis
mcun00061  Fatty acid biosynthesis
mcun00071  Fatty acid degradation
mcun00190  Oxidative phosphorylation
mcun00220  Arginine biosynthesis
mcun00250  Alanine, aspartate and glutamate metabolism
mcun00280  Valine, leucine and isoleucine degradation
mcun00350  Tyrosine metabolism
mcun00470  D-Amino acid metabolism
mcun00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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