KEGG   PATHWAY: mfy00020
Entry
mfy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Massilia forsythiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mfy00020  Citrate cycle (TCA cycle)
mfy00020

Module
mfy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mfy00020]
mfy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mfy00020]
mfy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mfy00020]
mfy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mfy00020]
mfy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mfy00020]
Other DBs
GO: 0006099
Organism
Massilia forsythiae [GN:mfy]
Gene
HH212_15255  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HH212_00715  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
HH212_15205  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
HH212_00765  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HH212_08290  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HH212_15355  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HH212_15360  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HH212_12890  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HH212_15370  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HH212_21105  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HH212_08915  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HH212_10695  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HH212_10690  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HH212_15240  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HH212_15245  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HH212_15230  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HH212_15235  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HH212_02170  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HH212_01425  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HH212_15220  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HH212_26800  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HH212_09170  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
HH212_12880  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HH212_12885  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mfy00010  Glycolysis / Gluconeogenesis
mfy00053  Ascorbate and aldarate metabolism
mfy00061  Fatty acid biosynthesis
mfy00071  Fatty acid degradation
mfy00190  Oxidative phosphorylation
mfy00220  Arginine biosynthesis
mfy00250  Alanine, aspartate and glutamate metabolism
mfy00280  Valine, leucine and isoleucine degradation
mfy00350  Tyrosine metabolism
mfy00470  D-Amino acid metabolism
mfy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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