KEGG   PATHWAY: mgry00630
Entry
mgry00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Magnetospirillum gryphiswaldense MSR-1
Class
Metabolism; Carbohydrate metabolism
Pathway map
mgry00630  Glyoxylate and dicarboxylate metabolism
mgry00630

Module
mgry_M00621  Glycine cleavage system [PATH:mgry00630]
mgry_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:mgry00630]
Other DBs
GO: 0046487 0043648
Organism
Magnetospirillum gryphiswaldense MSR-1 [GN:mgry]
Gene
MSR1_04650  acsA_1; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
MSR1_24870  acsA_4; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
MSR1_35620  acsA_5; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
MSR1_15070  acsA_3; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
MSR1_27390  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MSR1_09220  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
MSR1_29060  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MSR1_04790  phbA; acetoacetyl-CoA Reduktase [KO:K00626] [EC:2.3.1.9]
MSR1_20050  thlA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
MSR1_04800  phbB; beta-ketothiolase [KO:K00023] [EC:1.1.1.36]
MSR1_22260  phaJ; (R)-specific enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
MSR1_36920  ccrA2; Crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
MSR1_11610  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein [KO:K05606] [EC:5.1.99.1]
MSR1_36930  scpA_3; Methylmalonyl-CoA mutase [KO:K14447] [EC:5.4.99.63]
MSR1_36910  mmgC_5; Acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
MSR1_22170  bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase [KO:K14449] [EC:4.2.1.148]
MSR1_29830  mcl1; Malyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
MSR1_28800  accA1_3; Acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
MSR1_28810  accD5; putative propionyl-CoA carboxylase beta chain 5 [KO:K01966] [EC:6.4.1.3 2.1.3.15]
MSR1_29810  scpA_2; Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
MSR1_24750  Glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
MSR1_28840  gph_2; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
MSR1_21280  cbbZC; Phosphoglycolate phosphatase, chromosomal [KO:K01091] [EC:3.1.3.18]
MSR1_11160  gph_1; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
MSR1_14470  cbbM; Ribulose bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
MSR1_19720  pucG; Purine catabolism protein PucG [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
MSR1_02270  gltB_1; Ferredoxin-dependent glutamate synthase 1 [KO:K00284] [EC:1.4.7.1]
MSR1_01570  glnA; Glutamine synthetase 1 [KO:K01915] [EC:6.3.1.2]
MSR1_10860  glyA1; Serine hydroxymethyltransferase 1 [KO:K00600] [EC:2.1.2.1]
MSR1_34840  gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 [KO:K00282] [EC:1.4.4.2]
MSR1_34850  gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 [KO:K00283] [EC:1.4.4.2]
MSR1_34820  gcvT; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
MSR1_27340  lpd3; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
MSR1_12880  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MSR1_34830  gcvH; Glycine cleavage system H protein [KO:K02437]
MSR1_16470  ttuD; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
MSR1_05600  Putative formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
MSR1_05590  hndC; NADP-reducing hydrogenase subunit HndC [KO:K00124]
MSR1_05580  hndA; NADP-reducing hydrogenase subunit HndA [KO:K00127]
MSR1_19260  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
mgry00010  Glycolysis / Gluconeogenesis
mgry00020  Citrate cycle (TCA cycle)
mgry00030  Pentose phosphate pathway
mgry00053  Ascorbate and aldarate metabolism
mgry00071  Fatty acid degradation
mgry00230  Purine metabolism
mgry00250  Alanine, aspartate and glutamate metabolism
mgry00260  Glycine, serine and threonine metabolism
mgry00620  Pyruvate metabolism
mgry00710  Carbon fixation by Calvin cycle
mgry00750  Vitamin B6 metabolism
mgry00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system