KEGG   PATHWAY: msyl00240
Entry
msyl00240                   Pathway                                
Name
Pyrimidine metabolism - Malus sylvestris (European crab apple)
Class
Metabolism; Nucleotide metabolism
Pathway map
msyl00240  Pyrimidine metabolism
msyl00240

Module
msyl_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:msyl00240]
msyl_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:msyl00240]
msyl_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:msyl00240]
msyl_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:msyl00240]
Other DBs
GO: 0006220 0006213
Organism
Malus sylvestris (European crab apple) [GN:msyl]
Gene
126589424  carbamoyl-phosphate synthase large chain, chloroplastic-like [KO:K01955] [EC:6.3.5.5]
126616128  carbamoyl-phosphate synthase small chain, chloroplastic-like [KO:K01956] [EC:6.3.5.5]
126590649  carbamoyl-phosphate synthase small chain, chloroplastic-like [KO:K01956] [EC:6.3.5.5]
126601827  aspartate carbamoyltransferase 2, chloroplastic [KO:K00609] [EC:2.1.3.2]
126582306  dihydroorotase, mitochondrial isoform X1 [KO:K01465] [EC:3.5.2.3]
126587824  dihydroorotate dehydrogenase (quinone), mitochondrial-like [KO:K00254] [EC:1.3.5.2]
126624096  dihydroorotate dehydrogenase (quinone), mitochondrial-like [KO:K00254] [EC:1.3.5.2]
126583047  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
126627839  UMP-CMP kinase 3-like isoform X1 [KO:K13800] [EC:2.7.4.14]
126628911  UMP-CMP kinase [KO:K13800] [EC:2.7.4.14]
126630681  UMP-CMP kinase-like isoform X1 [KO:K13800] [EC:2.7.4.14]
126619769  UMP-CMP kinase 3-like [KO:K13800] [EC:2.7.4.14]
126629491  uridylate kinase PUMPKIN, chloroplastic-like [KO:K09903] [EC:2.7.4.22]
126603304  uridylate kinase PUMPKIN, chloroplastic-like [KO:K09903] [EC:2.7.4.22]
126625316  nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [KO:K00940] [EC:2.7.4.6]
126626688  nucleoside diphosphate kinase 2, chloroplastic-like [KO:K00940] [EC:2.7.4.6]
126599668  nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [KO:K00940] [EC:2.7.4.6]
126600922  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
126629554  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
126589858  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
126607129  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
126596945  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
126599230  apyrase 2-like [KO:K14641] [EC:3.6.1.5]
126593669  apyrase 2-like [KO:K14641] [EC:3.6.1.5]
126605085  uncharacterized protein LOC126605085 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
126605522  uncharacterized protein LOC126605522 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
126606233  nudix hydrolase 25-like [KO:K26955] [EC:3.6.1.17]
126595717  nudix hydrolase 25-like [KO:K26955] [EC:3.6.1.17]
126589567  uncharacterized protein LOC126589567 [KO:K01937] [EC:6.3.4.2]
126586016  uncharacterized protein LOC126586016 [KO:K01937] [EC:6.3.4.2]
126586979  uncharacterized protein LOC126586979 isoform X1 [KO:K01937] [EC:6.3.4.2]
126621588  uncharacterized protein LOC126621588 [KO:K01937] [EC:6.3.4.2]
126621999  uncharacterized protein LOC126621999 [KO:K01937] [EC:6.3.4.2]
126615838  uncharacterized protein LOC126615838 isoform X1 [KO:K01937] [EC:6.3.4.2]
126582356  uridine/cytidine kinase UKL1, chloroplastic-like isoform X1 [KO:K00876] [EC:2.7.1.48]
126583782  uridine kinase-like protein 5 isoform X1 [KO:K00876] [EC:2.7.1.48]
126599397  inorganic pyrophosphatase TTM1-like [KO:K00876] [EC:2.7.1.48]
126612608  uridine/cytidine kinase UKL1, chloroplastic [KO:K00876] [EC:2.7.1.48]
126627165  inorganic pyrophosphatase TTM1-like isoform X1 [KO:K00876] [EC:2.7.1.48]
126614980  uridine kinase-like protein 3 isoform X1 [KO:K00876] [EC:2.7.1.48]
126589582  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
126594917  inorganic pyrophosphatase TTM2-like [KO:K00876] [EC:2.7.1.48]
126607494  inorganic pyrophosphatase TTM2-like [KO:K00876] [EC:2.7.1.48]
126583145  uncharacterized protein LOC126583145 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
126597477  uncharacterized protein LOC126597477 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
126609388  uncharacterized protein LOC126609388 isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
126600298  probable uridine nucleosidase 2 isoform X1 [KO:K01240] [EC:3.2.2.3]
126600536  uridine nucleosidase 1-like [KO:K01240] [EC:3.2.2.3]
126603426  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
126593873  uridine nucleosidase 1-like [KO:K01240] [EC:3.2.2.3]
126618556  uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
126594191  uracil phosphoribosyltransferase-like [KO:K00761] [EC:2.4.2.9]
126590885  pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
126629913  uncharacterized protein LOC126629913 [KO:K24242] [EC:3.1.3.91]
126611928  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
126605079  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
126627882  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
126604459  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
126597766  ribonucleoside-diphosphate reductase small chain A-like [KO:K10808] [EC:1.17.4.1]
126609785  ribonucleoside-diphosphate reductase small chain-like [KO:K10808] [EC:1.17.4.1]
126583853  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
126606832  ribonucleoside-diphosphate reductase small chain A-like isoform X1 [KO:K10808] [EC:1.17.4.1]
126598662  uncharacterized protein LOC126598662 [KO:K16904] [EC:3.6.1.12]
126626318  uncharacterized protein LOC126626318 [KO:K16904] [EC:3.6.1.12]
126585301  uncharacterized protein LOC126585301 [KO:K16904] [EC:3.6.1.12]
126618900  uncharacterized protein LOC126618900 [KO:K16904] [EC:3.6.1.12]
126618902  uncharacterized protein LOC126618902 [KO:K16904] [EC:3.6.1.12]
126618904  uncharacterized protein LOC126618904 [KO:K16904] [EC:3.6.1.12]
126606679  uncharacterized protein LOC126606679 [KO:K16904] [EC:3.6.1.12]
126595804  uncharacterized protein LOC126595804 [KO:K16904] [EC:3.6.1.12]
126624627  uncharacterized protein LOC126624627 [KO:K16904] [EC:3.6.1.12]
126597725  uncharacterized protein LOC126597725 [KO:K07023] [EC:3.1.3.89]
126594899  uncharacterized protein LOC126594899 [KO:K07023] [EC:3.1.3.89]
126607502  5'-deoxynucleotidase hdd1 [KO:K07023] [EC:3.1.3.89]
126598616  uncharacterized protein LOC126598616 [KO:K01493] [EC:3.5.4.12]
126582668  thymidylate kinase-like [KO:K00943] [EC:2.7.4.9]
126612456  thymidylate kinase-like isoform X1 [KO:K00943] [EC:2.7.4.9]
126603893  deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
126633437  deoxyuridine 5'-triphosphate nucleotidohydrolase-like [KO:K01520] [EC:3.6.1.23]
126633438  deoxyuridine 5'-triphosphate nucleotidohydrolase-like isoform X1 [KO:K01520] [EC:3.6.1.23]
126610785  thymidine kinase a-like [KO:K00857] [EC:2.7.1.21]
126587982  thymidine kinase a-like [KO:K00857] [EC:2.7.1.21]
126634165  thymidine kinase a-like [KO:K00857] [EC:2.7.1.21]
126586977  bifunctional dihydrofolate reductase-thymidylate synthase-like [KO:K13998] [EC:1.5.1.3 2.1.1.45]
126622017  bifunctional dihydrofolate reductase-thymidylate synthase-like [KO:K13998] [EC:1.5.1.3 2.1.1.45]
126626756  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic-like [KO:K00207] [EC:1.3.1.2]
126599834  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic-like [KO:K00207] [EC:1.3.1.2]
126615841  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
126586522  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
msyl00030  Pentose phosphate pathway
msyl00220  Arginine biosynthesis
msyl00250  Alanine, aspartate and glutamate metabolism
msyl00280  Valine, leucine and isoleucine degradation
msyl00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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