KEGG   PATHWAY: naq00020
Entry
naq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neisseria animalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
naq00020  Citrate cycle (TCA cycle)
naq00020

Module
naq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:naq00020]
naq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:naq00020]
naq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:naq00020]
naq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:naq00020]
Other DBs
GO: 0006099
Organism
Neisseria animalis [GN:naq]
Gene
D0T90_02230  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
D0T90_07855  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
D0T90_09410  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
D0T90_02225  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
D0T90_02220  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
D0T90_02215  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D0T90_08540  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D0T90_09980  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D0T90_01935  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
D0T90_02245  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
D0T90_02240  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
D0T90_02255  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
D0T90_02250  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
D0T90_07115  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
D0T90_01030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
D0T90_04055  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
D0T90_09970  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
D0T90_09975  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
naq00010  Glycolysis / Gluconeogenesis
naq00061  Fatty acid biosynthesis
naq00071  Fatty acid degradation
naq00190  Oxidative phosphorylation
naq00220  Arginine biosynthesis
naq00250  Alanine, aspartate and glutamate metabolism
naq00280  Valine, leucine and isoleucine degradation
naq00350  Tyrosine metabolism
naq00470  D-Amino acid metabolism
naq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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