KEGG   PATHWAY: ncr03013
Entry
ncr03013                    Pathway                                
Name
Nucleocytoplasmic transport - Neurospora crassa
Description
The exchange of molecules between the nucleus and cytoplasm is mediated through nuclear pore complexes (NPCs) embedded in the nuclear envelope. The NPC is composed of highly conserved, distinct structural modules: the inner pore ring, the cytoplasmic and nuclear rings as well as the cytoplasmic filaments and the nuclear basket. Nuclear transport receptors (e.g. importins and exportins) mediate translocation of cargos through the NPC. Cargo proteins harbouring a nuclear export signal (NES) bind to exportins and Ran-GTP to form an export complex in the nucleoplasm. Nuclear export of bulk mRNA is provided by the non-karyopherin transport proteins TAP-p15 in a Ran-GTP-independent manner. Several EJC factors are known to function in mRNA export.
Class
Genetic Information Processing; Translation
Pathway map
ncr03013  Nucleocytoplasmic transport
ncr03013

Other DBs
GO: 0050658
Organism
Neurospora crassa [GN:ncr]
Gene
NCU01198  gle-1; gle-1 protein [KO:K18723]
NCU01160  ATP-dependent RNA helicase dbp-5 [KO:K18655] [EC:5.6.2.7]
NCU04288  Poly(A)+ RNA export protein [KO:K14298]
NCU04784  hypothetical protein [KO:K14297]
NCU03207  ran GTPase activating protein 1 [KO:K14319]
NCU04302  ubiquitin-conjugating enzyme E [KO:K10577]
NCU02742  hypothetical protein [KO:K14303]
NCU04063  protein transporter sec-13 [KO:K14004]
NCU09814  hypothetical protein [KO:K14301]
NCU04007  hypothetical protein [KO:K14300]
NCU04376  hypothetical protein [KO:K14299]
NCU09062  hypothetical protein [KO:K25129]
NCU02808  hypothetical protein [KO:K14306]
NCU07655  hypothetical protein [KO:K14307]
NCU02473  nucleoporin Nup44 [KO:K14308]
NCU00273  hypothetical protein [KO:K14310]
NCU00199  hypothetical protein [KO:K14311]
NCU04463  non-repetitive nucleoporin [KO:K14312]
NCU01702  nuclear pore protein [KO:K14309]
NCU06776  hypothetical protein [KO:K14315]
NCU10747  hypothetical protein [KO:K18725]
NCU06674  hypothetical protein [KO:K18724]
NCU06968  hypothetical protein [KO:K20724]
NCU04059  hypothetical protein [KO:K09291]
NCU01249  importin alpha subunit [KO:K15042]
NCU02011  importin subunit beta-1 [KO:K14293]
NCU03690  importin beta-2 subunit [KO:K18752]
NCU06355  karyopherin [KO:K15436]
NCU05650  karyopherin Kap123 [KO:K20221]
NCU02357  importin subunit beta-3 [KO:K20222]
NCU01939  nonsense-mediated mRNA decay protein [KO:K20223]
NCU06578  KapG [KO:K20224]
NCU16337  nup-9; nucleoporin-9 [KO:K25201]
NCU01820  exportin-1 [KO:K14290]
NCU04104  chromosome segregation protein Cse1 [KO:K18423]
NCU00134  exportin-T [KO:K14288]
NCU02387  nuclear import and export protein Msn5 [KO:K14289]
NCU09269  ran; ran-like [KO:K07936]
NCU02003  tef-1; translation elongation factor-1 [KO:K03231]
NCU04187  cap binding protein [KO:K12882]
NCU00210  nuclear cap binding protein subunit 2 [KO:K12883]
NCU08663  nonsense-mediated mRNA decay protein 3 [KO:K07562]
NCU03226  Y14 protein [KO:K12876]
NCU04405  mago nashi protein [KO:K12877]
NCU01234  eukaryotic initiation factor 4A-12 [KO:K13025] [EC:5.6.2.7]
NCU00159  Sin3-associated polypeptide Sap18 [KO:K14324]
NCU09901  hypothetical protein [KO:K14325]
NCU07421  hypothetical protein [KO:K12881]
NCU01793  RNA binding domain-containing protein [KO:K12881]
NCU04242  prd-6; period-6 [KO:K14326] [EC:5.6.2.5 5.6.2.3]
NCU05267  nonsense-mediated mRNA decay factor [KO:K14327]
NCU03435  hypothetical protein [KO:K14328]
NCU09317  hypothetical protein [KO:K14284]
NCU03631  hypothetical protein [KO:K14285]
NCU09076  ATP-dependent RNA helicase [KO:K12812] [EC:5.6.2.7]
NCU03285  hypothetical protein [KO:K13171]
NCU03232  RNA binding protein Pym [KO:K14294]
NCU07865  THO complex subunit Tho1 [KO:K12878]
NCU07002  THO complex component [KO:K12879]
NCU03239  hypothetical protein [KO:K13174]
NCU02753  WD repeat-containing protein [KO:K12880]
Reference
  Authors
Tran EJ, Wente SR
  Title
Dynamic nuclear pore complexes: life on the edge.
  Journal
Cell 125:1041-53 (2006)
DOI:10.1016/j.cell.2006.05.027
Reference
  Authors
Rodriguez MS, Dargemont C, Stutz F
  Title
Nuclear export of RNA.
  Journal
Biol Cell 96:639-55 (2004)
DOI:10.1016/j.biolcel.2004.04.014
Reference
  Authors
Palancade B, Doye V
  Title
Sumoylating and desumoylating enzymes at nuclear pores: underpinning their unexpected duties?
  Journal
Trends Cell Biol 18:174-83 (2008)
DOI:10.1016/j.tcb.2008.02.001
Reference
  Authors
Reed R, Cheng H
  Title
TREX, SR proteins and export of mRNA.
  Journal
Curr Opin Cell Biol 17:269-73 (2005)
DOI:10.1016/j.ceb.2005.04.011
Reference
  Authors
Tange TO, Shibuya T, Jurica MS, Moore MJ
  Title
Biochemical analysis of the EJC reveals two new factors and a stable tetrameric protein core.
  Journal
RNA 11:1869-83 (2005)
DOI:10.1261/rna.2155905
Reference
  Authors
Beck M, Schirmacher P, Singer S
  Title
Alterations of the nuclear transport system in hepatocellular carcinoma - New basis for therapeutic strategies.
  Journal
J Hepatol 67:1051-1061 (2017)
DOI:10.1016/j.jhep.2017.06.021
Related
pathway
ncr03015  mRNA surveillance pathway
KO pathway
ko03013   
LinkDB

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