KEGG   PATHWAY: nfu03082
Entry
nfu03082                    Pathway                                
Name
ATP-dependent chromatin remodeling - Nothobranchius furzeri (turquoise killifish)
Class
Genetic Information Processing; Chromosome
Pathway map
nfu03082  ATP-dependent chromatin remodeling
nfu03082

Organism
Nothobranchius furzeri (turquoise killifish) [GN:nfu]
Gene
107389532  smarca5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [KO:K11654] [EC:5.6.2.-]
107391918  baz1a; bromodomain adjacent to zinc finger domain protein 1A [KO:K11655]
107380485  baz1b; tyrosine-protein kinase BAZ1B isoform X1 [KO:K11658]
107391161  baz2a; bromodomain adjacent to zinc finger domain protein 2A [KO:K15224]
107381656  baz2b; bromodomain adjacent to zinc finger domain protein 2B isoform X1 [KO:K26167]
107394744  chrac1; chromatin accessibility complex protein 1 [KO:K11656]
107381530  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
107379770  rsf1; remodeling and spacing factor 1 isoform X1 [KO:K11657]
107387116  remodeling and spacing factor 1-like [KO:K11657]
107391526  bptf; nucleosome-remodeling factor subunit BPTF [KO:K11728]
107392587  histone-binding protein RBBP4 [KO:K10752]
107387158  csgr11h17orf49; chromatin complexes subunit BAP18 isoform X1 [KO:K23406]
107389345  cecr2; cat eye syndrome critical region protein 2 isoform X1 [KO:K25830]
107377309  LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 3-like [KO:K11642] [EC:5.6.2.-]
107394770  chromodomain-helicase-DNA-binding protein 4-like [KO:K11643] [EC:5.6.2.-]
107379461  chd4; chromodomain-helicase-DNA-binding protein 4 isoform X1 [KO:K11643] [EC:5.6.2.-]
107392535  hdac1; histone deacetylase 1 isoform X1 [KO:K06067] [EC:3.5.1.98]
107397144  probable histone deacetylase 1-B [KO:K06067] [EC:3.5.1.98]
107375055  methyl-CpG-binding domain protein 2-like [KO:K11590]
107393299  methyl-CpG-binding domain protein 3-like isoform X1 [KO:K11591]
107384146  methyl-CpG-binding domain protein 3-like [KO:K11591]
107387760  mta3; metastasis-associated protein MTA3 [KO:K11660]
107384769  mta2; metastasis-associated protein MTA2 [KO:K11660]
107392020  mta1; metastasis-associated protein MTA1 [KO:K11660]
107383277  gatad2b; transcriptional repressor p66-beta [KO:K23194]
107384091  transcriptional repressor p66 alpha-like isoform X1 [KO:K23194]
107393333  gatad2a; transcriptional repressor p66-alpha isoform X1 [KO:K23194]
107389774  phf11; PHD finger protein 11 isoform X1 [KO:K23310]
107379348  phf6; PHD finger protein 6 [KO:K23310]
107375149  cdk2ap1; cyclin-dependent kinase 2-associated protein 1 isoform X1 [KO:K26454]
107375198  cdk2ap2; cyclin-dependent kinase 2-associated protein 2 [KO:K26455]
107376228  smarca4; transcription activator BRG1 [KO:K11647] [EC:5.6.2.-]
107382302  transcription activator BRG1-like isoform X1 [KO:K11647] [EC:5.6.2.-]
107386097  probable global transcription activator SNF2L2 [KO:K11647] [EC:5.6.2.-]
107375000  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like [KO:K11648]
107386082  smarcb1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [KO:K11648]
107379207  smarcc1; SWI/SNF complex subunit SMARCC1 isoform X1 [KO:K11649]
107385626  smarcc2; SWI/SNF complex subunit SMARCC2 [KO:K11649]
107383345  SWI/SNF complex subunit SMARCC1-like isoform X1 [KO:K11649]
107387916  smarcd2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 [KO:K11650]
107385393  smarcd1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [KO:K11650]
107382547  smarcd3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1 [KO:K11650]
107393441  smarce1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1 [KO:K11651]
107391565  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X1 [KO:K11651]
107389815  actin, cytoplasmic 2 [KO:K05692]
107392684  actl6a; actin-like protein 6A [KO:K11340]
107380484  bcl7b; B-cell CLL/lymphoma 7 protein family member B [KO:K25605]
107396177  bcl7a; B-cell CLL/lymphoma 7 protein family member A isoform X1 [KO:K25605]
107391178  ss18l1; calcium-responsive transactivator isoform X1 [KO:K15623]
107383932  ss18; protein SSXT isoform X1 [KO:K15623]
107396939  AT-rich interactive domain-containing protein 1A-like [KO:K11653]
107392507  AT-rich interactive domain-containing protein 1B-like [KO:K11653]
107377936  arid1b; AT-rich interactive domain-containing protein 1B isoform X1 [KO:K11653]
107378708  arid1a; AT-rich interactive domain-containing protein 1A isoform X1 [KO:K11653]
107397035  zinc finger protein neuro-d4-like [KO:K22198]
107372393  zinc finger protein neuro-d4-like [KO:K22198]
107377988  zinc finger protein DPF3-like [KO:K22198]
107392430  zinc finger protein DPF3-like [KO:K22198]
107386459  zinc finger protein ubi-d4-like isoform X1 [KO:K13196]
107377286  dpf2; zinc finger protein ubi-d4 [KO:K13196]
107382905  arid2; AT-rich interactive domain-containing protein 2 [KO:K11765]
107385747  protein polybromo-1-like isoform X1 [KO:K11757]
107385180  protein polybromo-1-like isoform X1 [KO:K11757]
107381238  brd7; bromodomain-containing protein 7 isoform X1 [KO:K11723]
107381192  phf10; PHD finger protein 10 [KO:K22197]
107373766  bromodomain-containing protein 9-like isoform X1 [KO:K22184]
107374149  brd9; bromodomain-containing protein 9 [KO:K22184]
107380157  gltscr1; glioma tumor suppressor candidate region gene 1 protein isoform X1 [KO:K25612]
107387704  gltscr1l; GLTSCR1-like protein [KO:K25613]
107377982  ino80; DNA helicase INO80 isoform X1 [KO:K11665] [EC:5.6.2.-]
107377049  ino80b; INO80 complex subunit B isoform X1 [KO:K11666]
107379754  ino80c; INO80 complex subunit C [KO:K11667]
107389978  ino80d; INO80 complex subunit D [KO:K11668]
107379498  ino80e; INO80 complex subunit E isoform X1 [KO:K11669]
107379713  tfpt; TCF3 fusion partner [KO:K11670]
107386400  nfrkb; nuclear factor related to kappa-B-binding protein [KO:K11671]
107385654  mcrs1; microspherule protein 1 [KO:K11674]
107393018  uchl5; ubiquitin carboxyl-terminal hydrolase isozyme L5 [KO:K05610] [EC:3.4.19.12]
107385709  ruvbl1; ruvB-like 1 [KO:K04499] [EC:5.6.2.4]
107387016  ruvbl2; ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
107390580  actr5; actin-related protein 5 [KO:K11672]
107373408  actr8; actin-related protein 8 [KO:K11673]
107378101  transcriptional repressor protein YY1-like isoform X1 [KO:K09201]
107392297  transcriptional repressor protein YY1-like [KO:K09201]
107387465  srcap; helicase SRCAP isoform X1 [KO:K11661] [EC:5.6.2.-]
107392655  dmap1; DNA methyltransferase 1-associated protein 1 [KO:K11324]
107385173  yeats4; YEATS domain-containing protein 4 [KO:K11341]
107394666  vps72; vacuolar protein sorting-associated protein 72 homolog [KO:K11664]
107382380  histone H2A-like [KO:K11251]
107384756  histone H2A.Z [KO:K11251]
107375490  core histone macro-H2A.2 [KO:K11251]
107380017  histone H2A [KO:K11251]
107391747  histone H2A-like [KO:K11251]
107391757  histone H2A-like [KO:K11251]
107391765  histone H2A-like [KO:K11251]
107391776  histone H2A-like [KO:K11251]
107383791  histone H2A-like [KO:K11251]
107382256  histone H2A-like [KO:K11251]
107387423  histone H2A, sperm-like [KO:K11251]
107386699  core histone macro-H2A.1 isoform X1 [KO:K11251]
107375345  histone H2A-like [KO:K11251]
107373348  histone H2A-like [KO:K11251]
107386217  histone H2A.V [KO:K11251]
107386469  histone H2AX [KO:K11251]
107389127  actr6; actin-related protein 6 [KO:K11662]
107383120  znhit1; zinc finger HIT domain-containing protein 1 [KO:K11663]
107393614  ep400; E1A-binding protein p400 isoform X1 [KO:K11320] [EC:5.6.2.-]
107388150  trrap; transformation/transcription domain-associated protein isoform X1 [KO:K08874]
107381744  mortality factor 4-like protein 1 [KO:K11339]
107388706  mortality factor 4-like protein 1 [KO:K11339]
107373357  mrgbp; MRG/MORF4L-binding protein [KO:K11343]
107379723  bromodomain-containing protein 8-like isoform X1 [KO:K11321]
107386396  bromodomain-containing protein 8-like [KO:K11321]
107395093  ing3; inhibitor of growth protein 3 [KO:K11319]
107383440  enhancer of polycomb homolog 1-like isoform X1 [KO:K11322]
107383080  enhancer of polycomb homolog 1-like isoform X1 [KO:K11322]
107395442  meaf6; chromatin modification-related protein MEAF6 isoform X1 [KO:K11344]
107386462  kat5; histone acetyltransferase KAT5 isoform X1 [KO:K11304] [EC:2.3.1.48]
Reference
PMID:31769422
  Authors
Hasan N, Ahuja N
  Title
The Emerging Roles of ATP-Dependent Chromatin Remodeling Complexes in Pancreatic Cancer.
  Journal
Cancers (Basel) 11:cancers11121859 (2019)
DOI:10.3390/cancers11121859
Reference
PMID:32001526
  Authors
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
  Title
Structure of nucleosome-bound human BAF complex.
  Journal
Science 367:875-881 (2020)
DOI:10.1126/science.aaz9761
Reference
PMID:33941852
  Authors
Wanior M, Kramer A, Knapp S, Joerger AC
  Title
Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy.
  Journal
Oncogene 40:3637-3654 (2021)
DOI:10.1038/s41388-021-01781-x
Reference
PMID:20493981
  Authors
Burgio G, Onorati MC, Corona DF
  Title
Chromatin remodeling regulation by small molecules and metabolites.
  Journal
Biochim Biophys Acta 1799:671-80 (2010)
DOI:10.1016/j.bbagrm.2010.05.007
KO pathway
ko03082   
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