KEGG   PATHWAY: oml00010
Entry
oml00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Oryzias melastigma (Indian medaka)
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oml00010  Glycolysis / Gluconeogenesis
oml00010

Module
oml_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:oml00010]
oml_M00002  Glycolysis, core module involving three-carbon compounds [PATH:oml00010]
oml_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oml00010]
oml_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oml00010]
Other DBs
GO: 0006096 0006094
Organism
Oryzias melastigma (Indian medaka) [GN:oml]
Gene
112160408  hexokinase HKDC1 [KO:K00844] [EC:2.7.1.1]
112160409  hexokinase-1 [KO:K00844] [EC:2.7.1.1]
112141117  hexokinase-2 [KO:K00844] [EC:2.7.1.1]
112148289  hk2; hexokinase-2 [KO:K00844] [EC:2.7.1.1]
112157010  hexokinase-1 isoform X2 [KO:K00844] [EC:2.7.1.1]
112148443  gck; hexokinase-4 [KO:K12407] [EC:2.7.1.2]
112160756  gpib; glucose-6-phosphate isomerase b [KO:K01810] [EC:5.3.1.9]
112141173  gpia; glucose-6-phosphate isomerase a [KO:K01810] [EC:5.3.1.9]
112155057  pfkla; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
112144439  ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
112151051  pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
112145768  pfkmb; phosphofructokinase, muscle b [KO:K00850] [EC:2.7.1.11]
112158822  pfkma; phosphofructokinase, muscle a [KO:K00850] [EC:2.7.1.11]
112147949  fbp2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
112148874  fructose-1,6-bisphosphatase 1 [KO:K03841] [EC:3.1.3.11]
112163411  fbp1b; fructose-1,6-bisphosphatase 1b [KO:K03841] [EC:3.1.3.11]
112140737  aldocb; fructose-bisphosphate aldolase C-B [KO:K01623] [EC:4.1.2.13]
112154088  aldoab; aldolase a, fructose-bisphosphate, b [KO:K01623] [EC:4.1.2.13]
112149379  aldoca; fructose-bisphosphate aldolase C-A [KO:K01623] [EC:4.1.2.13]
112153314  aldob; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
112162704  triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
112143692  tpi1b; triosephosphate isomerase B [KO:K01803] [EC:5.3.1.1]
112143695  gapdh; glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
112143405  gapdhs; glyceraldehyde-3-phosphate dehydrogenase 2 [KO:K10705] [EC:1.2.1.12]
112142456  pgk1; phosphoglycerate kinase 1 [KO:K00927] [EC:2.7.2.3]
112161758  pgam1b; phosphoglycerate mutase 1b [KO:K01834] [EC:5.4.2.11]
112162801  pgam2; phosphoglycerate mutase 2 [KO:K01834] [EC:5.4.2.11]
112141511  eno3; beta-enolase [KO:K01689] [EC:4.2.1.11]
112162694  gamma-enolase [KO:K01689] [EC:4.2.1.11]
112143680  gamma-enolase [KO:K01689] [EC:4.2.1.11]
112145710  eno1b; enolase 1b, (alpha) [KO:K01689] [EC:4.2.1.11]
112158789  eno1a; enolase 1a, (alpha) isoform X1 [KO:K01689] [EC:4.2.1.11]
112161556  eno4; enolase 4 isoform X1 [KO:K27394] [EC:4.2.1.11]
112143273  pklr; pyruvate kinase PKLR isoform X1 [KO:K00873] [EC:2.7.1.40]
112160988  pkma; pyruvate kinase PKM isoform X1 [KO:K00873] [EC:2.7.1.40]
112152743  pkmb; pyruvate kinase PKM [KO:K00873] [EC:2.7.1.40]
112140226  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a [KO:K00161] [EC:1.2.4.1]
112158967  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
112144778  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
112142745  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
112141240  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
112140371  ldhba; L-lactate dehydrogenase B-A chain [KO:K00016] [EC:1.1.1.27]
112151791  ldha; L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
112152922  ldhbb; L-lactate dehydrogenase B-B chain isoform X1 [KO:K00016] [EC:1.1.1.27]
112141459  alcohol dehydrogenase class-3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
112151518  alcohol dehydrogenase class-3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
112145284  alcohol dehydrogenase 1 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
112145293  alcohol dehydrogenase 1 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
112145298  alcohol dehydrogenase 1 isoform X1 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
112145309  alcohol dehydrogenase 1 isoform X2 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
112148243  akr1a1a; aldo-keto reductase family 1 member A1-A [KO:K00002] [EC:1.1.1.2]
112150478  akr1a1b; aldo-keto reductase family 1 member A1-B isoform X1 [KO:K00002] [EC:1.1.1.2]
112142944  aldh3a2b; aldehyde dehydrogenase family 3 member A2b [KO:K00128] [EC:1.2.1.3]
112136362  aldehyde dehydrogenase, dimeric NADP-preferring isoform X1 [KO:K00128] [EC:1.2.1.3]
112151135  aldehyde dehydrogenase, mitochondrial [KO:K00128] [EC:1.2.1.3]
112158023  aldh16a1; aldehyde dehydrogenase family 16 member A1 [KO:K00128] [EC:1.2.1.3]
112150430  aldh7a1; alpha-aminoadipic semialdehyde dehydrogenase [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
112147259  aldh9a1b; 4-trimethylaminobutyraldehyde dehydrogenase B [KO:K00149] [EC:1.2.1.47 1.2.1.3]
112150670  aldh9a1a.1; 4-trimethylaminobutyraldehyde dehydrogenase A [KO:K00149] [EC:1.2.1.47 1.2.1.3]
112148216  aldh3b2; aldehyde dehydrogenase family 3 member B1 [KO:K00129] [EC:1.2.1.5]
112158440  aldh3b1; aldehyde dehydrogenase family 3 member B1 [KO:K00129] [EC:1.2.1.5]
112158153  acss1; acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
112145244  acss2; acetyl-coenzyme A synthetase, cytoplasmic isoform X1 [KO:K01895] [EC:6.2.1.1]
112151857  acss2l; acyl-CoA synthetase short chain family member 2 like [KO:K01895] [EC:6.2.1.1]
112161361  galm; aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
112147215  phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
112150512  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
112157016  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
112140444  g6pca.2; glucose-6-phosphatase [KO:K01084] [EC:3.1.3.9]
112140446  g6pca.1; glucose-6-phosphatase a, catalytic subunit, tandem duplicate 1 [KO:K01084] [EC:3.1.3.9]
112154194  g6pc3; glucose-6-phosphatase 3 [KO:K01084] [EC:3.1.3.9]
112155359  glucose-6-phosphatase 2 [KO:K01084] [EC:3.1.3.9]
112160421  adpgk2; ADP-dependent glucokinase [KO:K08074] [EC:2.7.1.147]
112141254  adpgk; ADP-dependent glucokinase isoform X1 [KO:K08074] [EC:2.7.1.147]
112152318  bpgm; bisphosphoglycerate mutase [KO:K01837] [EC:5.4.2.4 5.4.2.11]
118597846  minpp1b; multiple inositol polyphosphate phosphatase 1b [KO:K03103] [EC:3.1.3.62 3.1.3.80]
112162089  minpp1a; multiple inositol polyphosphate phosphatase 1a [KO:K03103] [EC:3.1.3.62 3.1.3.80]
112151237  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
112145622  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oml00020  Citrate cycle (TCA cycle)
oml00030  Pentose phosphate pathway
oml00500  Starch and sucrose metabolism
oml00620  Pyruvate metabolism
oml00640  Propanoate metabolism
KO pathway
ko00010   
LinkDB

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