KEGG   PATHWAY: padl04146
Entry
padl04146                   Pathway                                
Name
Peroxisome - Pygoscelis adeliae (Adelie penguin)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
padl04146  Peroxisome
padl04146

Other DBs
GO: 0005777
Organism
Pygoscelis adeliae (Adelie penguin) [GN:padl]
Gene
103921739  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
103912756  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
103925111  ABCD3; ATP-binding cassette sub-family D member 3 isoform X1 [KO:K05677] [EC:7.6.2.4]
103922384  PEX1; peroxisome biogenesis factor 1 isoform X1 [KO:K13338]
103923110  PEX6; peroxisome biogenesis factor 6 [KO:K13339]
103912746  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
103914972  PEX5L; PEX5-related protein isoform X1 [KO:K13342]
103921865  PEX5; LOW QUALITY PROTEIN: peroxisomal biogenesis factor 5 [KO:K13342]
103918039  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
103913168  PEX13; LOW QUALITY PROTEIN: peroxisome biogenesis factor 13 [KO:K13344]
103918688  PEX12; LOW QUALITY PROTEIN: peroxisome assembly protein 12 [KO:K13345]
103913957  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
103926181  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
103925989  protein Mpv17-like [KO:K13348]
103917584  MPV17L; mpv17-like protein [KO:K13349]
103912424  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
103922709  PEX11A; peroxisomal membrane protein 11A [KO:K13351]
103912187  PEX11G; peroxisomal membrane protein 11C [KO:K13353]
103915077  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
103918430  HACL1; LOW QUALITY PROTEIN: 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
103912209  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
103915010  phytanoyl-CoA dioxygenase, peroxisomal-like [KO:K00477] [EC:1.14.11.18]
103915028  LOW QUALITY PROTEIN: phytanoyl-CoA dioxygenase, peroxisomal-like [KO:K00477] [EC:1.14.11.18]
103920941  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
103917481  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 [KO:K00232] [EC:1.3.3.6]
103918901  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
103912347  HSD17B4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
103913664  SCP2; LOW QUALITY PROTEIN: non-specific lipid-transfer protein [KO:K08764] [EC:2.3.1.176]
103916934  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
103912560  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [KO:K13237] [EC:1.3.1.124]
103917259  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
103913035  ABCD4; ATP-binding cassette sub-family D member 4 [KO:K05678] [EC:7.6.2.8]
103922782  SLC27A2; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
103915797  ACSL6; long-chain-fatty-acid--CoA ligase 6 [KO:K01897] [EC:6.2.1.3]
103918573  ACSL5; long-chain-fatty-acid--CoA ligase 5 isoform X1 [KO:K01897] [EC:6.2.1.3]
103922527  ACSL1; long-chain-fatty-acid--CoA ligase 1 [KO:K01897] [EC:6.2.1.3]
103917850  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
103920156  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
103916541  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
103919017  ECI2; enoyl-CoA delta isomerase 2, mitochondrial isoform X1 [KO:K13239] [EC:5.3.3.8]
103917651  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
103920858  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 [KO:K03426] [EC:3.6.1.22]
103918459  NUDT13; nucleoside diphosphate-linked moiety X motif 13 isoform X1 [KO:K03426] [EC:3.6.1.22]
103913783  NUDT19; nucleoside diphosphate-linked moiety X motif 19, mitochondrial [KO:K13355] [EC:3.6.1.77]
103916207  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
103915297  CRAT; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
103922455  CROT; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
103923894  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
103921300  GNPAT; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
103923993  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
103917231  FAR2; fatty acyl-CoA reductase 2 isoform X1 [KO:K13356] [EC:1.2.1.84]
103925730  FAR1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
103925691  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
103916221  AGXT; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
103925695  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
103918974  DDO; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
103914787  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
103923780  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
103924291  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
103923764  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
103924619  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
103913126  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
103921230  HAO2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
103925825  CAT; catalase [KO:K03781] [EC:1.11.1.6]
103920308  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
103918316  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
103912519  NOS2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
103919134  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
103921847  GSTK1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
103925004  XDH; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
padl00071  Fatty acid degradation
padl00120  Primary bile acid biosynthesis
padl00230  Purine metabolism
padl00564  Glycerophospholipid metabolism
padl00565  Ether lipid metabolism
padl00830  Retinol metabolism
padl00900  Terpenoid backbone biosynthesis
padl03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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