KEGG   PATHWAY: palw00630
Entry
palw00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudooceanicola algae
Class
Metabolism; Carbohydrate metabolism
Pathway map
palw00630  Glyoxylate and dicarboxylate metabolism
palw00630

Module
palw_M00373  Ethylmalonyl pathway [PATH:palw00630]
palw_M00621  Glycine cleavage system [PATH:palw00630]
palw_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:palw00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudooceanicola algae [GN:palw]
Gene
PSAL_003020  acsA_1; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
PSAL_026660  glcB; Malate synthase G [KO:K01638] [EC:2.3.3.9]
PSAL_019050  mdh_1; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PSAL_010780  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
PSAL_011940  acnA; Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
PSAL_019310  phaA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PSAL_028300  bktB; Beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
PSAL_016020  fadA; Putative acyltransferase [KO:K00626] [EC:2.3.1.9]
PSAL_019320  phaB; Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
PSAL_033870  hypothetical protein [KO:K17865] [EC:4.2.1.55]
PSAL_018850  ccr; Crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
PSAL_033570  epi; Ethylmalonyl-CoA/methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
PSAL_018860  ecm; Ethylmalonyl-CoA mutase [KO:K14447] [EC:5.4.99.63]
PSAL_022590  mcd; (2S)-methylsuccinyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
PSAL_019000  mch; Mesaconyl-CoA hydratase [KO:K14449] [EC:4.2.1.148]
PSAL_024060  mcl1; L-malyl-CoA/beta-methylmalyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
PSAL_019030  mcl2; (3S)-malyl-CoA thioesterase [KO:K14451] [EC:3.1.2.30]
PSAL_031700  accA1; Acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
PSAL_031650  pccB; Propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
PSAL_031710  mcm; Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
PSAL_029660  putative FAD-linked oxidoreductase [KO:K00104] [EC:1.1.99.14]
PSAL_029670  hypothetical protein [KO:K11472] [EC:1.1.99.14]
PSAL_029680  lutA; Lactate utilization protein A [KO:K11473] [EC:1.1.99.14]
PSAL_036560  katE; Catalase C [KO:K03781] [EC:1.11.1.6]
PSAL_020660  Glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
PSAL_031800  ghrA; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PSAL_020050  hypothetical protein [KO:K01091] [EC:3.1.3.18]
PSAL_004790  gph_1; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PSAL_013220  gph_2; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PSAL_002240  sgaA; Serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
PSAL_034130  ipuC; Glutamate--isopropylamine ligase [KO:K01915] [EC:6.3.1.2]
PSAL_037230  atdA1; Gamma-glutamylanilide synthase [KO:K01915] [EC:6.3.1.2]
PSAL_011850  glnA; Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PSAL_013850  puuA_1; Gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
PSAL_013870  puuA_2; Gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
PSAL_016190  glyA2; Serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
PSAL_022100  gcvP; Glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PSAL_022120  gcvT; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
PSAL_019160  lpd3; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
PSAL_011100  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSAL_022110  gcvH; Glycine cleavage system H protein [KO:K02437]
PSAL_024710  ttuD; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
PSAL_017360  aldA_1; Lactaldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
PSAL_006500  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PSAL_014420  hypothetical protein [KO:K00126] [EC:1.17.1.9]
PSAL_014440  Putative formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
PSAL_014450  hndC; NADP-reducing hydrogenase subunit HndC [KO:K00124]
PSAL_014460  hndA; NADP-reducing hydrogenase subunit HndA [KO:K00127]
PSAL_018040  hypothetical protein [KO:K01432] [EC:3.5.1.9]
PSAL_014930  hypothetical protein [KO:K01432] [EC:3.5.1.9]
PSAL_014950  hypothetical protein [KO:K01432] [EC:3.5.1.9]
PSAL_026100  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PSAL_029180  hypothetical protein [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
palw00010  Glycolysis / Gluconeogenesis
palw00020  Citrate cycle (TCA cycle)
palw00030  Pentose phosphate pathway
palw00053  Ascorbate and aldarate metabolism
palw00071  Fatty acid degradation
palw00230  Purine metabolism
palw00250  Alanine, aspartate and glutamate metabolism
palw00260  Glycine, serine and threonine metabolism
palw00620  Pyruvate metabolism
palw00710  Carbon fixation by Calvin cycle
palw00750  Vitamin B6 metabolism
palw00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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