KEGG   PATHWAY: papi00020
Entry
papi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pandoraea apista
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
papi00020  Citrate cycle (TCA cycle)
papi00020

Module
papi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:papi00020]
papi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:papi00020]
papi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:papi00020]
papi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:papi00020]
papi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:papi00020]
Other DBs
GO: 0006099
Organism
Pandoraea apista [GN:papi]
Gene
SG18_19830  excisionase [KO:K01647] [EC:2.3.3.1]
SG18_16940  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
SG18_27405  citrate synthase [KO:K01647] [EC:2.3.3.1]
SG18_23650  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
SG18_16895  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
SG18_23345  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SG18_03410  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SG18_00590  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SG18_22485  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
SG18_22480  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SG18_22475  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SG18_17465  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SG18_05345  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
SG18_05350  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SG18_23755  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
SG18_16925  fumarate reductase [KO:K00239] [EC:1.3.5.1]
SG18_16930  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
SG18_16915  succinate dehydrogenase [KO:K00241]
SG18_16920  succinate dehydrogenase [KO:K00242]
SG18_13450  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SG18_08655  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SG18_08755  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SG18_25545  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SG18_16905  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SG18_20245  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SG18_09705  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
SG18_17450  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
SG18_04690  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
SG18_17455  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
papi00010  Glycolysis / Gluconeogenesis
papi00053  Ascorbate and aldarate metabolism
papi00061  Fatty acid biosynthesis
papi00071  Fatty acid degradation
papi00190  Oxidative phosphorylation
papi00220  Arginine biosynthesis
papi00250  Alanine, aspartate and glutamate metabolism
papi00280  Valine, leucine and isoleucine degradation
papi00350  Tyrosine metabolism
papi00470  D-Amino acid metabolism
papi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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