KEGG   PATHWAY: pcay00020
Entry
pcay00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Persicimonas caeni
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcay00020  Citrate cycle (TCA cycle)
pcay00020

Module
pcay_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcay00020]
pcay_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcay00020]
pcay_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcay00020]
pcay_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcay00020]
Other DBs
GO: 0006099
Organism
Persicimonas caeni [GN:pcay]
Gene
FRD00_02985  citrate synthase [KO:K01647] [EC:2.3.3.1]
FRD00_01325  citrate synthase [KO:K01647] [EC:2.3.3.1]
FRD00_01330  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
FRD00_08090  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FRD00_13580  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FRD00_07680  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FRD00_28900  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FRD00_08645  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
FRD00_08595  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FRD00_08600  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FRD00_08605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FRD00_12440  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FRD00_23215  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FRD00_26680  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FRD00_28025  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FRD00_28020  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FRD00_21655  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FRD00_25020  FAD-dependent oxidoreductase [KO:K00239] [EC:1.3.5.1]
FRD00_21660  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FRD00_21650  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FRD00_21715  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FRD00_08890  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FRD00_09170  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
FRD00_07885  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FRD00_26670  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FRD00_04770  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FRD00_23770  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FRD00_04775  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FRD00_23775  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
FRD00_12435  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
FRD00_04780  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
FRD00_23780  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
FRD00_26675  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcay00010  Glycolysis / Gluconeogenesis
pcay00053  Ascorbate and aldarate metabolism
pcay00061  Fatty acid biosynthesis
pcay00071  Fatty acid degradation
pcay00190  Oxidative phosphorylation
pcay00220  Arginine biosynthesis
pcay00250  Alanine, aspartate and glutamate metabolism
pcay00280  Valine, leucine and isoleucine degradation
pcay00350  Tyrosine metabolism
pcay00470  D-Amino acid metabolism
pcay00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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