KEGG   PATHWAY: pcri04146
Entry
pcri04146                   Pathway                                
Name
Peroxisome - Pelecanus crispus (Dalmatian pelican)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
pcri04146  Peroxisome
pcri04146

Other DBs
GO: 0005777
Organism
Pelecanus crispus (Dalmatian pelican) [GN:pcri]
Gene
104025735  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
104025172  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
104036978  ABCD3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
104036473  PEX1; peroxisome biogenesis factor 1 [KO:K13338]
104027998  PEX6; peroxisome biogenesis factor 6 [KO:K13339]
104025409  PEX26; peroxisome assembly protein 26 [KO:K13340]
104034174  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
104027715  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
104030190  PEX5L; PEX5-related protein [KO:K13342]
104024891  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
104026908  PEX13; LOW QUALITY PROTEIN: peroxisome biogenesis factor 13 [KO:K13344]
104029242  PEX12; peroxisome assembly protein 12 [KO:K13345]
104025806  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
104027661  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
104025965  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
104038389  PEX11A; peroxisomal membrane protein 11A [KO:K13351]
104025196  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
104032401  HACL1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
104036449  PHYH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
104034635  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
104024790  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 [KO:K00232] [EC:1.3.3.6]
104034223  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
104036502  non-specific lipid-transfer protein [KO:K08764] [EC:2.3.1.176]
104030139  acyl-coenzyme A amino acid N-acyltransferase 2 {ECO:0000250 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
104035898  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
104033723  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
104024455  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [KO:K13237] [EC:1.3.1.124]
104036682  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
104033601  ABCD4; ATP-binding cassette sub-family D member 4 [KO:K05678] [EC:7.6.2.8]
104027744  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
104034101  SLC27A2; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
104035275  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
104025160  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
104027964  ACSL5; long-chain-fatty-acid--CoA ligase 5 isoform X1 [KO:K01897] [EC:6.2.1.3]
104034555  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
104024162  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
104025506  ECI2; enoyl-CoA delta isomerase 2, mitochondrial isoform X1 [KO:K13239] [EC:5.3.3.8]
104026321  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
104023702  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
104032660  NUDT13; nucleoside diphosphate-linked moiety X motif 13 [KO:K03426] [EC:3.6.1.22]
104025211  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
104030578  CRAT; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
104024075  peroxisomal carnitine O-octanoyltransferase-like [KO:K05940] [EC:2.3.1.137]
104031728  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
104031913  GNPAT; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
104031432  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
104031381  fatty acyl-CoA reductase 1-like [KO:K13356] [EC:1.2.1.84]
104034496  FAR1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
104024539  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
104028872  AGXT; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
104030462  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
104024691  DDO; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
104033596  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
104037035  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
104033748  hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
104033884  hydroxymethylglutaryl-CoA lyase, mitochondrial-like [KO:K01640] [EC:4.1.3.4]
104032134  HAO2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
104034209  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
104024824  CAT; catalase [KO:K03781] [EC:1.11.1.6]
104025927  superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
104029324  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
104035562  NOS2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
104026140  peroxiredoxin-1 isoform X1 [KO:K13279] [EC:1.11.1.24]
104029870  GSTK1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
104029369  XDH; xanthine dehydrogenase/oxidase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
pcri00071  Fatty acid degradation
pcri00120  Primary bile acid biosynthesis
pcri00230  Purine metabolism
pcri00564  Glycerophospholipid metabolism
pcri00565  Ether lipid metabolism
pcri00830  Retinol metabolism
pcri00900  Terpenoid backbone biosynthesis
pcri03320  PPAR signaling pathway
KO pathway
ko04146   
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