KEGG   PATHWAY: pden00330
Entry
pden00330                   Pathway                                
Name
Arginine and proline metabolism - Pseudomonas denitrificans (nom. rej.)
Class
Metabolism; Amino acid metabolism
Pathway map
pden00330  Arginine and proline metabolism
pden00330

Module
pden_M00015  Proline biosynthesis, glutamate => proline [PATH:pden00330]
pden_M00133  Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:pden00330]
pden_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:pden00330]
pden_M00970  Proline degradation, proline => glutamate [PATH:pden00330]
Other DBs
GO: 0006525 0006560
Organism
Pseudomonas denitrificans (nom. rej.) [GN:pden]
Gene
F1C79_10100  creatininase [KO:K01470] [EC:3.5.2.10]
F1C79_11035  creatininase family protein [KO:K01470] [EC:3.5.2.10]
F1C79_07660  codA; cytosine deaminase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
F1C79_18845  arginine decarboxylase [KO:K01584] [EC:4.1.1.19]
F1C79_04235  lysine decarboxylase [KO:K01584] [EC:4.1.1.19]
F1C79_20445  speA; arginine decarboxylase [KO:K01585] [EC:4.1.1.19]
F1C79_20475  speB; agmatinase [KO:K01480] [EC:3.5.3.11]
F1C79_07425  agmatine deiminase family protein [KO:K10536] [EC:3.5.3.12]
F1C79_07440  agmatine deiminase family protein [KO:K10536] [EC:3.5.3.12]
F1C79_11245  aguA; agmatine deiminase [KO:K10536] [EC:3.5.3.12]
F1C79_22895  aguA; agmatine deiminase [KO:K10536] [EC:3.5.3.12]
F1C79_07430  aguB; N-carbamoylputrescine amidase [KO:K12251] [EC:3.5.1.53]
F1C79_30260  type III PLP-dependent enzyme [KO:K01581] [EC:4.1.1.17]
F1C79_11370  speE; polyamine aminopropyltransferase [KO:K00797] [EC:2.5.1.16]
F1C79_03690  speE; polyamine aminopropyltransferase [KO:K00797] [EC:2.5.1.16]
F1C79_28065  speD; adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
F1C79_22860  aspartate aminotransferase family protein [KO:K12256] [EC:2.6.1.113]
F1C79_23825  aspartate aminotransferase family protein [KO:K12256] [EC:2.6.1.113]
F1C79_00870  FAD-dependent oxidoreductase [KO:K00316] [EC:1.5.99.6]
F1C79_24135  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
F1C79_00875  gamma-aminobutyraldehyde dehydrogenase [KO:K00137] [EC:1.2.1.19]
F1C79_00895  gamma-aminobutyraldehyde dehydrogenase [KO:K00137] [EC:1.2.1.19]
F1C79_19855  aldehyde dehydrogenase [KO:K12254] [EC:1.2.1.54 1.2.1.-]
F1C79_23320  aldehyde dehydrogenase [KO:K12254] [EC:1.2.1.54 1.2.1.-]
F1C79_19310  flavin monoamine oxidase family protein [KO:K00274] [EC:1.4.3.4]
F1C79_26820  flavin monoamine oxidase family protein [KO:K00274] [EC:1.4.3.4]
F1C79_24140  pyridoxal phosphate-dependent aminotransferase [KO:K12252] [EC:2.6.1.84]
F1C79_30200  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K02028 K12252] [EC:7.4.2.1 2.6.1.84]
F1C79_24145  5-guanidino-2-oxopentanoate decarboxylase [KO:K12253] [EC:4.1.1.75]
F1C79_15195  speB; agmatinase [KO:K12255] [EC:3.5.3.7]
F1C79_25475  amidase [KO:K01426] [EC:3.5.1.4]
F1C79_26240  amidase [KO:K01426] [EC:3.5.1.4]
F1C79_04810  amidase [KO:K01426] [EC:3.5.1.4]
F1C79_05820  amidase [KO:K01426] [EC:3.5.1.4]
F1C79_02295  aruF; arginine/ornithine succinyltransferase subunit alpha [KO:K00673] [EC:2.3.1.109]
F1C79_02300  astA; arginine N-succinyltransferase [KO:K00673] [EC:2.3.1.109]
F1C79_02310  astB; N-succinylarginine dihydrolase [KO:K01484] [EC:3.5.3.23]
F1C79_02290  aspartate aminotransferase family protein [KO:K00840] [EC:2.6.1.81]
F1C79_02305  astD; succinylglutamate-semialdehyde dehydrogenase [KO:K06447] [EC:1.2.1.71]
F1C79_02320  astE; succinylglutamate desuccinylase [KO:K05526] [EC:3.5.1.96]
F1C79_12425  FAD-binding oxidoreductase [KO:K09471] [EC:1.4.3.-]
F1C79_23305  FAD-binding oxidoreductase [KO:K09471] [EC:1.4.3.-]
F1C79_03015  FAD-binding oxidoreductase [KO:K09471] [EC:1.4.3.-]
F1C79_06640  FAD-binding oxidoreductase [KO:K09471] [EC:1.4.3.-]
F1C79_23830  aldehyde dehydrogenase [KO:K09472] [EC:1.2.1.99]
F1C79_26680  pyrroline-5-carboxylate reductase [KO:K00286] [EC:1.5.1.2]
F1C79_10125  putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase [KO:K13821] [EC:1.5.5.2 1.2.1.88]
F1C79_11080  ornithine cyclodeaminase [KO:K01750] [EC:4.3.1.12]
F1C79_29830  glutamate 5-kinase [KO:K00931] [EC:2.7.2.11]
F1C79_28725  glutamate-5-semialdehyde dehydrogenase [KO:K00147] [EC:1.2.1.41]
F1C79_21775  pip; prolyl aminopeptidase [KO:K01259] [EC:3.4.11.5]
F1C79_29220  hypothetical protein [KO:K22548] [EC:4.2.1.77]
F1C79_29240  DUF521 domain-containing protein [KO:K09123] [EC:4.2.1.171]
Compound
C00012  Peptide
C00019  S-Adenosyl-L-methionine
C00022  Pyruvate
C00025  L-Glutamate
C00048  Glyoxylate
C00062  L-Arginine
C00077  L-Ornithine
C00086  Urea
C00134  Putrescine
C00148  L-Proline
C00179  Agmatine
C00213  Sarcosine
C00223  p-Coumaroyl-CoA
C00300  Creatine
C00315  Spermidine
C00334  4-Aminobutanoate
C00406  Feruloyl-CoA
C00431  5-Aminopentanoate
C00436  N-Carbamoylputrescine
C00441  L-Aspartate 4-semialdehyde
C00533  Nitric oxide
C00555  4-Aminobutyraldehyde
C00581  Guanidinoacetate
C00750  Spermine
C00763  D-Proline
C00791  Creatinine
C00884  Homocarnosine
C00986  1,3-Diaminopropane
C01035  4-Guanidinobutanoate
C01043  N-Carbamoylsarcosine
C01110  5-Amino-2-oxopentanoic acid
C01137  S-Adenosylmethioninamine
C01157  Hydroxyproline
C01165  L-Glutamate 5-semialdehyde
C01250  N-Acetyl-L-glutamate 5-semialdehyde
C01682  Nopaline
C02305  Phosphocreatine
C02565  N-Methylhydantoin
C02647  4-Guanidinobutanal
C02714  N-Acetylputrescine
C02946  4-Acetamidobutanoate
C03078  4-Guanidinobutanamide
C03166  Phosphoguanidinoacetate
C03287  L-Glutamyl 5-phosphate
C03296  N2-Succinyl-L-arginine
C03375  Norspermidine
C03415  N2-Succinyl-L-ornithine
C03564  1-Pyrroline-2-carboxylate
C03771  5-Guanidino-2-oxopentanoate
C03912  (S)-1-Pyrroline-5-carboxylate
C04137  Octopine
C04281  L-1-Pyrroline-3-hydroxy-5-carboxylate
C05147  trans-3-Hydroxy-L-proline
C05931  N-Succinyl-L-glutamate
C05932  N-Succinyl-L-glutamate 5-semialdehyde
C05933  N(omega)-Hydroxyarginine
C05936  N4-Acetylaminobutanal
C05938  L-4-Hydroxyglutamate semialdehyde
C05945  L-Arginine phosphate
C05946  (4R)-4-Hydroxy-2-oxoglutarate
C05947  L-erythro-4-Hydroxyglutamate
C10497  Feruloylputrescine
C15699  gamma-L-Glutamylputrescine
C15700  gamma-Glutamyl-gamma-aminobutyraldehyde
C15767  4-(L-gamma-Glutamylamino)butanoate
C18172  Carboxyspermidine
C18174  Carboxynorspermidine
C18326  p-Coumaroylputrescine
C19706  cis-3-Hydroxy-L-proline
Reference
PMID:5288244
  Authors
Haake P, Allen GW.
  Title
Studies on phosphorylation by phosphoroguanidinates. The mechanism of action of creatine: ATP transphosphorylase (creatine kinase).
  Journal
Proc Natl Acad Sci U S A 68:2691-3 (1971)
DOI:10.1073/pnas.68.11.2691
Reference
PMID:16499623
  Authors
Kurihara S, Oda S, Kumagai H, Suzuki H.
  Title
Gamma-glutamyl-gamma-aminobutyrate hydrolase in the putrescine utilization pathway of Escherichia coli K-12.
  Journal
FEMS Microbiol Lett 256:318-23 (2006)
DOI:10.1111/j.1574-6968.2006.00137.x
Reference
PMID:15590624
  Authors
Kurihara S, Oda S, Kato K, Kim HG, Koyanagi T, Kumagai H, Suzuki H.
  Title
A novel putrescine utilization pathway involves gamma-glutamylated intermediates of Escherichia coli K-12.
  Journal
J Biol Chem 280:4602-8 (2005)
DOI:10.1074/jbc.M411114200
Related
pathway
pden00020  Citrate cycle (TCA cycle)
pden00220  Arginine biosynthesis
pden00250  Alanine, aspartate and glutamate metabolism
pden00260  Glycine, serine and threonine metabolism
pden00270  Cysteine and methionine metabolism
pden00310  Lysine degradation
pden00410  beta-Alanine metabolism
pden00470  D-Amino acid metabolism
pden00480  Glutathione metabolism
pden00630  Glyoxylate and dicarboxylate metabolism
pden00650  Butanoate metabolism
pden00770  Pantothenate and CoA biosynthesis
KO pathway
ko00330   
LinkDB

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