KEGG   PATHWAY: pdio00630
Entry
pdio00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia dioscoreae
Class
Metabolism; Carbohydrate metabolism
Pathway map
pdio00630  Glyoxylate and dicarboxylate metabolism
pdio00630

Module
pdio_M00012  Glyoxylate cycle [PATH:pdio00630]
pdio_M00621  Glycine cleavage system [PATH:pdio00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia dioscoreae [GN:pdio]
Gene
PDMSB3_2628  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
PDMSB3_2024.1  Acyl-CoA synthetase/AMP-acid ligase [KO:K01895] [EC:6.2.1.1]
PDMSB3_1434  acs; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
PDMSB3_1745  acsA; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
PDMSB3_2503  acsA; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
PDMSB3_3039  Acyl-CoA synthetase/AMP-acid ligase [KO:K01895] [EC:6.2.1.1]
PDMSB3_2102  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
PDMSB3_2632  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
PDMSB3_0152.1  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PDMSB3_3581  Citrate synthase [KO:K01647] [EC:2.3.3.1]
PDMSB3_0161.1  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PDMSB3_1968.1  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PDMSB3_0146.1  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
PDMSB3_1574.1  acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PDMSB3_2650.1  thlA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PDMSB3_3067.1  bktB; Beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
PDMSB3_0283  thlA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PDMSB3_1066  bktB; Beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
PDMSB3_1737  putative acyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
PDMSB3_1751  Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PDMSB3_1954  yqeF; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PDMSB3_1960  atoB; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PDMSB3_2053  fadA; 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
PDMSB3_3094.1  phaB; Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
PDMSB3_1955  phaB; Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
PDMSB3_0564  glcD; glycolate oxidase subunit, FAD-linked [KO:K00104] [EC:1.1.99.14]
PDMSB3_1056  glcD; glycolate oxidase subunit, FAD-linked [KO:K00104] [EC:1.1.99.14]
PDMSB3_2106  glcD; glycolate oxidase subunit, FAD-linked [KO:K00104] [EC:1.1.99.14]
PDMSB3_0563  glcE; glycolate oxidase FAD binding subunit [KO:K11472] [EC:1.1.99.14]
PDMSB3_1055  glcE; glycolate oxidase FAD binding subunit [KO:K11472] [EC:1.1.99.14]
PDMSB3_2105  glcE; glycolate oxidase FAD binding subunit [KO:K11472] [EC:1.1.99.14]
PDMSB3_0562  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
PDMSB3_1054  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
PDMSB3_2104  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
PDMSB3_1421.1  srpA; Catalase-related peroxidase [KO:K03781] [EC:1.11.1.6]
PDMSB3_1891.1  katE; hydroperoxidase HPII(III) (catalase) [KO:K03781] [EC:1.11.1.6]
PDMSB3_0556  katA; Catalase [KO:K03781] [EC:1.11.1.6]
PDMSB3_0922  Catalase-related peroxidase [KO:K03781] [EC:1.11.1.6]
PDMSB3_1611.1  D-3-phosphoglycerate dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PDMSB3_2785.1  D-3-phosphoglycerate dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PDMSB3_0269  ghrA; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PDMSB3_3235  gyaR; Glyoxylate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PDMSB3_2361  tiaE; 2-oxo-carboxylic acid reductase (glyoxalate reductase) (2-ketoaldonate reductase) [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PDMSB3_2171.1  hprA; Glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
PDMSB3_3226  Haloacid dehalogenase superfamily enzyme, subfamily IA [KO:K01091] [EC:3.1.3.18]
PDMSB3_3921  Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PDMSB3_0586.1  cbbZC; Phosphoglycolate phosphatase, chromosomal [KO:K01091] [EC:3.1.3.18]
PDMSB3_0613.1  cbbL; Ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
PDMSB3_0614.1  cbbS; Ribulose bisphosphate carboxylase small chain [KO:K01602] [EC:4.1.1.39]
PDMSB3_0039.1  sgaA; Serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
PDMSB3_2213.1  Gamma-glutamyl-putrescine synthetase [KO:K01915] [EC:6.3.1.2]
PDMSB3_2901  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PDMSB3_1495.1  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PDMSB3_0625  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PDMSB3_4281  gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex [KO:K00281] [EC:1.4.4.2]
PDMSB3_3317.1  Glycine dehydrogenase (decarboxylating) (glycine cleavage system P1 protein) [KO:K00282] [EC:1.4.4.2]
PDMSB3_3318.1  gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 [KO:K00283] [EC:1.4.4.2]
PDMSB3_4279  gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex [KO:K00605] [EC:2.1.2.10]
PDMSB3_2810.1  lpd; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
PDMSB3_1705  odhL; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PDMSB3_2876  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PDMSB3_4280  gcvH; glycine cleavage complex lipoylprotein [KO:K02437]
PDMSB3_1885  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
PDMSB3_1884  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
PDMSB3_2687.1  Uncharacterized oxidoreductase Sfri_1503 [KO:K00042] [EC:1.1.1.60]
PDMSB3_1883  glxR; tartronate semialdehyde reductase, NADH-dependent [KO:K00042] [EC:1.1.1.60]
PDMSB3_2026  glxK; Glycerate kinase [KO:K00865] [EC:2.7.1.165]
PDMSB3_1468.1  ttuC; putative tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PDMSB3_1615.1  yeaU; putative tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PDMSB3_3781  eda; 4-hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PDMSB3_3324  NADH-dependent formate dehydrogenase delta subunit FdsD [KO:K00126] [EC:1.17.1.9]
PDMSB3_3323  Formate dehydrogenase, alpha subunit, archaeal-type [KO:K00123] [EC:1.17.1.9]
PDMSB3_0534.1  Formate dehydrogenase O alpha subunit / selenocysteine-containing [KO:K00123] [EC:1.17.1.9]
PDMSB3_3322  NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [KO:K00124]
PDMSB3_0535.1  fdoH; formate dehydrogenase-O, Fe-S subunit [KO:K00124]
PDMSB3_3321  NADH:ubiquinone oxidoreductase 24 kD subunit [KO:K00127]
PDMSB3_0536.1  fdoI; formate dehydrogenase-O, cytochrome b556 subunit [KO:K00127]
PDMSB3_2383.1  Arylformamidase [KO:K01432] [EC:3.5.1.9]
PDMSB3_0613  Tryptophan 2,3-dioxygenase (fragment) [KO:K01432] [EC:3.5.1.9]
PDMSB3_3632  kynB; Kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
PDMSB3_1506.1  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PDMSB3_0431  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PDMSB3_1382.1  fmdA; Formamidase [KO:K01455] [EC:3.5.1.49]
PDMSB3_1546  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
PDMSB3_0294.1  oxc; putative oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pdio00010  Glycolysis / Gluconeogenesis
pdio00020  Citrate cycle (TCA cycle)
pdio00030  Pentose phosphate pathway
pdio00053  Ascorbate and aldarate metabolism
pdio00071  Fatty acid degradation
pdio00230  Purine metabolism
pdio00250  Alanine, aspartate and glutamate metabolism
pdio00260  Glycine, serine and threonine metabolism
pdio00620  Pyruvate metabolism
pdio00710  Carbon fixation by Calvin cycle
pdio00750  Vitamin B6 metabolism
pdio00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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