KEGG   PATHWAY: pdul00240
Entry
pdul00240                   Pathway                                
Name
Pyrimidine metabolism - Prunus dulcis (almond)
Class
Metabolism; Nucleotide metabolism
Pathway map
pdul00240  Pyrimidine metabolism
pdul00240

Module
pdul_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:pdul00240]
pdul_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pdul00240]
pdul_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pdul00240]
pdul_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pdul00240]
Other DBs
GO: 0006220 0006213
Organism
Prunus dulcis (almond) [GN:pdul]
Gene
117630732  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
117632330  carbamoyl-phosphate synthase small chain, chloroplastic-like [KO:K01956] [EC:6.3.5.5]
117633213  carbamoyl-phosphate synthase small chain, chloroplastic-like [KO:K01956] [EC:6.3.5.5]
117626773  aspartate carbamoyltransferase 1, chloroplastic [KO:K00609] [EC:2.1.3.2]
117622242  dihydroorotase, mitochondrial [KO:K01465] [EC:3.5.2.3]
117631331  dihydroorotate dehydrogenase (quinone), mitochondrial-like [KO:K00254] [EC:1.3.5.2]
117626731  dihydroorotate dehydrogenase (quinone), mitochondrial-like isoform X1 [KO:K00254] [EC:1.3.5.2]
117619352  uridine 5'-monophosphate synthase isoform X1 [KO:K13421] [EC:2.4.2.10 4.1.1.23]
117617178  UMP-CMP kinase 3-like isoform X1 [KO:K13800] [EC:2.7.4.14]
117618740  UMP-CMP kinase 3-like isoform X1 [KO:K13800] [EC:2.7.4.14]
117622779  UMP-CMP kinase 3-like [KO:K13800] [EC:2.7.4.14]
117637145  UMP-CMP kinase [KO:K13800] [EC:2.7.4.14]
117630323  uridylate kinase-like [KO:K09903] [EC:2.7.4.22]
117631242  uridylate kinase-like [KO:K09903] [EC:2.7.4.22]
117617311  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
117627636  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
117632593  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
117613040  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
117634425  apyrase 2-like [KO:K14641] [EC:3.6.1.5]
117635585  ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
117616753  nudix hydrolase 25 isoform X1 [KO:K26955] [EC:3.6.1.17]
117624581  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
117625020  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
117636665  LOW QUALITY PROTEIN: CTP synthase [KO:K01937] [EC:6.3.4.2]
117627734  CTP synthase-like [KO:K01937] [EC:6.3.4.2]
117629902  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
117621352  uridine kinase-like protein 5 isoform X1 [KO:K00876] [EC:2.7.1.48]
117622452  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
117615360  inorganic pyrophosphatase TTM2 [KO:K00876] [EC:2.7.1.48]
117627248  inorganic pyrophosphatase TTM1 [KO:K00876] [EC:2.7.1.48]
117633858  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
117623170  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
117615607  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
117633733  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
117634637  uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
117632555  uracil phosphoribosyltransferase isoform X1 [KO:K00761] [EC:2.4.2.9]
117626674  pseudouridine-5'-phosphate glycosidase isoform X1 [KO:K16329] [EC:4.2.1.70]
117620151  cytosolic 5'-nucleotidase 3-like isoform X1 [KO:K24242] [EC:3.1.3.91]
117636020  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
117631781  ribonucleoside-diphosphate reductase large subunit isoform X1 [KO:K10807] [EC:1.17.4.1]
117622736  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
117638346  ribonucleoside-diphosphate reductase small chain A isoform X1 [KO:K10808] [EC:1.17.4.1]
117628500  dCTP pyrophosphatase 1-like isoform X1 [KO:K16904] [EC:3.6.1.12]
117615292  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
117637846  dCTP pyrophosphatase 1-like [KO:K16904] [EC:3.6.1.12]
117637391  5'-deoxynucleotidase HDDC2 isoform X1 [KO:K07023] [EC:3.1.3.89]
117627404  5'-deoxynucleotidase hdd1 [KO:K07023] [EC:3.1.3.89]
117628261  deoxycytidylate deaminase isoform X1 [KO:K01493] [EC:3.5.4.12]
117622146  thymidylate kinase-like [KO:K00943] [EC:2.7.4.9]
117623574  thymidylate kinase-like isoform X1 [KO:K00943] [EC:2.7.4.9]
117625892  deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
117622212  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
117636448  bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
117627838  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
117626495  dihydropyrimidinase-like [KO:K01464] [EC:3.5.2.2]
117626535  dihydropyrimidinase-like [KO:K01464] [EC:3.5.2.2]
117612160  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
pdul00030  Pentose phosphate pathway
pdul00220  Arginine biosynthesis
pdul00250  Alanine, aspartate and glutamate metabolism
pdul00280  Valine, leucine and isoleucine degradation
pdul00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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