KEGG   PATHWAY: pfis00630
Entry
pfis00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paracoccus fistulariae
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfis00630  Glyoxylate and dicarboxylate metabolism
pfis00630

Module
pfis_M00373  Ethylmalonyl pathway [PATH:pfis00630]
pfis_M00621  Glycine cleavage system [PATH:pfis00630]
pfis_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pfis00630]
Other DBs
GO: 0046487 0043648
Organism
Paracoccus fistulariae [GN:pfis]
Gene
JHX87_01845  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
JHX87_10955  malate synthase G [KO:K01638] [EC:2.3.3.9]
JHX87_05230  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JHX87_06605  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
JHX87_09790  citrate synthase [KO:K01647] [EC:2.3.3.1]
JHX87_07285  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
JHX87_01050  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
JHX87_04830  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JHX87_06510  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
JHX87_11415  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
JHX87_14275  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JHX87_14270  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
JHX87_01705  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
JHX87_08940  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
JHX87_07480  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
JHX87_08935  protein meaA [KO:K14447] [EC:5.4.99.63]
JHX87_14200  acyl-CoA/acyl-ACP dehydrogenase [KO:K14448] [EC:1.3.8.12]
JHX87_05205  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
JHX87_05090  L-malyl-CoA/beta-methylmalyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
JHX87_05220  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
JHX87_01600  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
JHX87_01620  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
JHX87_09650  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
JHX87_01585  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
JHX87_18310  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
JHX87_18315  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
JHX87_18320  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
JHX87_06140  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
JHX87_14785  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
JHX87_03530  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
JHX87_04185  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
JHX87_15635  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
JHX87_04035  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
JHX87_09555  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
JHX87_04755  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JHX87_05820  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
JHX87_05905  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JHX87_05710  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
JHX87_12615  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
JHX87_12625  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
JHX87_04150  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHX87_05285  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHX87_06550  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHX87_12620  gcvH; glycine cleavage system protein GcvH [KO:K02437]
JHX87_16060  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
JHX87_04475  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
JHX87_03820  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
JHX87_00355  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
JHX87_00360  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
JHX87_03830  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
JHX87_00350  fdxH; formate dehydrogenase subunit beta [KO:K00124]
JHX87_03835  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
JHX87_00345  formate dehydrogenase subunit gamma [KO:K00127]
JHX87_03840  formate dehydrogenase subunit gamma [KO:K00127]
JHX87_15080  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
JHX87_04145  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pfis00010  Glycolysis / Gluconeogenesis
pfis00020  Citrate cycle (TCA cycle)
pfis00030  Pentose phosphate pathway
pfis00053  Ascorbate and aldarate metabolism
pfis00071  Fatty acid degradation
pfis00230  Purine metabolism
pfis00250  Alanine, aspartate and glutamate metabolism
pfis00260  Glycine, serine and threonine metabolism
pfis00620  Pyruvate metabolism
pfis00710  Carbon fixation by Calvin cycle
pfis00750  Vitamin B6 metabolism
pfis00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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