KEGG   PATHWAY: pmaa00020
Entry
pmaa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoalteromonas marina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmaa00020  Citrate cycle (TCA cycle)
pmaa00020

Module
pmaa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmaa00020]
pmaa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmaa00020]
pmaa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmaa00020]
pmaa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmaa00020]
pmaa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmaa00020]
Other DBs
GO: 0006099
Organism
Pseudoalteromonas marina [GN:pmaa]
Gene
CPA52_08725  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CPA52_09505  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
CPA52_00940  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CPA52_01080  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CPA52_07055  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CPA52_09140  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CPA52_08700  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
CPA52_08695  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CPA52_02090  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPA52_11905  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPA52_08685  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CPA52_08690  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CPA52_08710  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CPA52_08705  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CPA52_08720  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CPA52_08715  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CPA52_09980  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CPA52_15780  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CPA52_02125  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CPA52_14875  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CPA52_02080  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CPA52_02085  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmaa00010  Glycolysis / Gluconeogenesis
pmaa00061  Fatty acid biosynthesis
pmaa00071  Fatty acid degradation
pmaa00190  Oxidative phosphorylation
pmaa00220  Arginine biosynthesis
pmaa00250  Alanine, aspartate and glutamate metabolism
pmaa00280  Valine, leucine and isoleucine degradation
pmaa00350  Tyrosine metabolism
pmaa00470  D-Amino acid metabolism
pmaa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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