KEGG   PATHWAY: pmaw00020
Entry
pmaw00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Planctobacterium marinum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmaw00020  Citrate cycle (TCA cycle)
pmaw00020

Module
pmaw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmaw00020]
pmaw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmaw00020]
pmaw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmaw00020]
pmaw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmaw00020]
pmaw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmaw00020]
Other DBs
GO: 0006099
Organism
Planctobacterium marinum [GN:pmaw]
Gene
MACH26_23830  citrate synthase [KO:K01647] [EC:2.3.3.1]
MACH26_24430  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
MACH26_11640  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MACH26_16830  idh; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MACH26_31660  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MACH26_23780  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
MACH26_23770  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MACH26_11420  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MACH26_23750  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MACH26_23760  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MACH26_23800  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MACH26_23790  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MACH26_23820  sdhC; succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
MACH26_23810  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
MACH26_19980  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
MACH26_05210  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MACH26_09090  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MACH26_01240  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
MACH26_11400  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MACH26_11410  aceF; acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmaw00010  Glycolysis / Gluconeogenesis
pmaw00053  Ascorbate and aldarate metabolism
pmaw00061  Fatty acid biosynthesis
pmaw00071  Fatty acid degradation
pmaw00190  Oxidative phosphorylation
pmaw00220  Arginine biosynthesis
pmaw00250  Alanine, aspartate and glutamate metabolism
pmaw00280  Valine, leucine and isoleucine degradation
pmaw00350  Tyrosine metabolism
pmaw00470  D-Amino acid metabolism
pmaw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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