KEGG   PATHWAY: pop00250
Entry
pop00250                    Pathway                                
Name
Alanine, aspartate and glutamate metabolism - Populus trichocarpa (black cottonwood)
Class
Metabolism; Amino acid metabolism
Pathway map
pop00250  Alanine, aspartate and glutamate metabolism
pop00250

Module
pop_M00027  GABA (gamma-Aminobutyrate) shunt [PATH:pop00250]
Other DBs
GO: 0006522 0006531 0006536
Organism
Populus trichocarpa (black cottonwood) [GN:pop]
Gene
7458772  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
7471542  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
7471541  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
7466303  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
7468079  aspartate aminotransferase, mitochondrial isoform X1 [KO:K14455] [EC:2.6.1.1]
7465406  aspartate aminotransferase, chloroplastic [KO:K00811] [EC:2.6.1.1]
7489135  aspartate aminotransferase, chloroplastic [KO:K00811] [EC:2.6.1.1]
7487858  L-aspartate oxidase 2-a, chloroplastic [KO:K00278] [EC:1.4.3.16]
7462862  probable isoaspartyl peptidase/L-asparaginase 2 [KO:K13051] [EC:3.5.1.1 3.4.19.5]
7496928  probable isoaspartyl peptidase/L-asparaginase 2 [KO:K13051] [EC:3.5.1.1 3.4.19.5]
18103728  isoaspartyl peptidase/L-asparaginase 1 [KO:K13051] [EC:3.5.1.1 3.4.19.5]
7454859  asparagine synthetase [glutamine-hydrolyzing] 1 [KO:K01953] [EC:6.3.5.4]
7471507  asparagine synthetase [glutamine-hydrolyzing] 2 [KO:K01953] [EC:6.3.5.4]
7496783  asparagine synthetase [glutamine-hydrolyzing] 1 [KO:K01953] [EC:6.3.5.4]
7462234  omega-amidase, chloroplastic isoform X1 [KO:K13566] [EC:3.5.1.3]
18094672  alanine aminotransferase 1, mitochondrial [KO:K00814] [EC:2.6.1.2]
7461955  alanine aminotransferase 2 [KO:K00814] [EC:2.6.1.2]
7467988  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
7467398  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
7456937  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
7468078  alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial isoform X1 [KO:K00827] [EC:2.6.1.44 2.6.1.40]
7460426  alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
7469050  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
7460760  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
7490894  argininosuccinate synthase, chloroplastic [KO:K01940] [EC:6.3.4.5]
7491622  argininosuccinate synthase, chloroplastic [KO:K01940] [EC:6.3.4.5]
7467203  argininosuccinate lyase, chloroplastic [KO:K01755] [EC:4.3.2.1]
7467615  adenylosuccinate synthetase, chloroplastic [KO:K01939] [EC:6.3.4.4]
7458090  uncharacterized protein LOC7458090 [KO:K01756] [EC:4.3.2.2]
7478712  aspartate carbamoyltransferase 1, chloroplastic [KO:K00609] [EC:2.1.3.2]
7494518  glutamate decarboxylase 1 isoform X1 [KO:K01580] [EC:4.1.1.15]
7457832  glutamate decarboxylase 4 [KO:K01580] [EC:4.1.1.15]
7459087  glutamate decarboxylase 4 [KO:K01580] [EC:4.1.1.15]
7468337  glutamate decarboxylase 1 [KO:K01580] [EC:4.1.1.15]
7485189  glutamate decarboxylase [KO:K01580] [EC:4.1.1.15]
18106489  glutamate decarboxylase [KO:K01580] [EC:4.1.1.15]
7455851  gamma aminobutyrate transaminase 3, chloroplastic [KO:K16871] [EC:2.6.1.96]
7495636  gamma aminobutyrate transaminase 1, mitochondrial [KO:K16871] [EC:2.6.1.96]
7481606  succinate-semialdehyde dehydrogenase, mitochondrial [KO:K17761] [EC:1.2.1.24]
7453835  glutamate synthase [NADH], amyloplastic isoform X1 [KO:K00264] [EC:1.4.1.14]
18103637  glutamate synthase 1 [NADH], chloroplastic isoform X1 [KO:K00264] [EC:1.4.1.14]
7482352  glutamate dehydrogenase 1 isoform X2 [KO:K00261] [EC:1.4.1.3]
7456680  glutamate dehydrogenase 2 [KO:K00261] [EC:1.4.1.3]
7469881  glutamate dehydrogenase 1 [KO:K00261] [EC:1.4.1.3]
18103847  glutamate dehydrogenase 2 isoform X1 [KO:K00261] [EC:1.4.1.3]
18094850  uncharacterized protein LOC18094850 isoform X4 [KO:K00262] [EC:1.4.1.4]
18105810  probable aldehyde dehydrogenase isoform X1 [KO:K00294] [EC:1.2.1.88]
7493567  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
7475932  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
7486383  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
7485167  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
18109315  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
18106624  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
7469108  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
18105568  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
7475373  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
7461992  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
18094578  carbamoyl-phosphate synthase small chain, chloroplastic isoform X1 [KO:K01956] [EC:6.3.5.5]
7459227  glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 [KO:K00820] [EC:2.6.1.16]
7494291  amidophosphoribosyltransferase, chloroplastic [KO:K00764] [EC:2.4.2.14]
18097889  amidophosphoribosyltransferase, chloroplastic [KO:K00764] [EC:2.4.2.14]
Compound
C00014  Ammonia
C00022  Pyruvate
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00041  L-Alanine
C00042  Succinate
C00049  L-Aspartate
C00064  L-Glutamine
C00122  Fumarate
C00152  L-Asparagine
C00158  Citrate
C00169  Carbamoyl phosphate
C00232  Succinate semialdehyde
C00334  4-Aminobutanoate
C00352  D-Glucosamine 6-phosphate
C00402  D-Aspartate
C00438  N-Carbamoyl-L-aspartate
C00940  2-Oxoglutaramate
C01042  N-Acetyl-L-aspartate
C02362  2-Oxosuccinamate
C03090  5-Phosphoribosylamine
C03406  N-(L-Arginino)succinate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03912  (S)-1-Pyrroline-5-carboxylate
C12270  N-Acetylaspartylglutamate
C20775  beta-Citryl-L-glutamate
C20776  N-Acetylaspartylglutamylglutamate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:9687539
  Authors
Wu G
  Title
Intestinal mucosal amino acid catabolism.
  Journal
J Nutr 128:1249-52 (1998)
DOI:10.1093/jn/128.8.1249
Related
pathway
pop00010  Glycolysis / Gluconeogenesis
pop00020  Citrate cycle (TCA cycle)
pop00220  Arginine biosynthesis
pop00230  Purine metabolism
pop00240  Pyrimidine metabolism
pop00260  Glycine, serine and threonine metabolism
pop00261  Monobactam biosynthesis
pop00300  Lysine biosynthesis
pop00330  Arginine and proline metabolism
pop00340  Histidine metabolism
pop00410  beta-Alanine metabolism
pop00460  Cyanoamino acid metabolism
pop00470  D-Amino acid metabolism
pop00480  Glutathione metabolism
pop00520  Amino sugar and nucleotide sugar metabolism
pop00620  Pyruvate metabolism
pop00630  Glyoxylate and dicarboxylate metabolism
pop00650  Butanoate metabolism
pop00660  C5-Branched dibasic acid metabolism
pop00760  Nicotinate and nicotinamide metabolism
pop00770  Pantothenate and CoA biosynthesis
pop00860  Porphyrin metabolism
pop00910  Nitrogen metabolism
KO pathway
ko00250   
LinkDB

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