KEGG   PATHWAY: pory00630
Entry
pory00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas oryziphila
Class
Metabolism; Carbohydrate metabolism
Pathway map
pory00630  Glyoxylate and dicarboxylate metabolism
pory00630

Module
pory_M00012  Glyoxylate cycle [PATH:pory00630]
pory_M00621  Glycine cleavage system [PATH:pory00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas oryziphila [GN:pory]
Gene
EJA05_18735  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
EJA05_19090  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EJA05_20405  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EJA05_03960  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EJA05_01930  malate synthase G [KO:K01638] [EC:2.3.3.9]
EJA05_10605  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EJA05_19425  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EJA05_08965  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EJA05_10195  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EJA05_19080  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EJA05_24840  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EJA05_04460  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EJA05_12405  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EJA05_11030  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
EJA05_12205  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
EJA05_12200  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
EJA05_12195  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
EJA05_00365  catalase HPII [KO:K03781] [EC:1.11.1.6]
EJA05_02680  catalase [KO:K03781] [EC:1.11.1.6]
EJA05_12265  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
EJA05_04680  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
EJA05_23895  2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
EJA05_23550  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
EJA05_00255  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
EJA05_02305  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
EJA05_08100  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
EJA05_16630  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EJA05_20225  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EJA05_20745  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EJA05_26255  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
EJA05_27575  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EJA05_01140  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EJA05_01145  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EJA05_12850  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EJA05_24440  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
EJA05_01755  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
EJA05_22600  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
EJA05_01085  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
EJA05_22610  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
EJA05_01075  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
EJA05_19390  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJA05_20250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJA05_27945  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJA05_22595  gcvH; glycine cleavage system protein GcvH [KO:K02437]
EJA05_01080  gcvH; glycine cleavage system protein GcvH [KO:K02437]
EJA05_08820  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
EJA05_08815  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
EJA05_08810  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
EJA05_13785  glycerate kinase [KO:K00865] [EC:2.7.1.165]
EJA05_08805  glycerate kinase [KO:K11529] [EC:2.7.1.165]
EJA05_15685  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
EJA05_22440  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
EJA05_09735  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
EJA05_02935  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
EJA05_09730  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
EJA05_02940  fdxH; formate dehydrogenase subunit beta [KO:K00124]
EJA05_09725  formate dehydrogenase beta subunit [KO:K00124]
EJA05_02945  formate dehydrogenase subunit gamma [KO:K00127]
EJA05_09720  formate dehydrogenase subunit gamma [KO:K00127]
EJA05_23315  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
EJA05_01780  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
EJA05_26165  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pory00010  Glycolysis / Gluconeogenesis
pory00020  Citrate cycle (TCA cycle)
pory00030  Pentose phosphate pathway
pory00053  Ascorbate and aldarate metabolism
pory00071  Fatty acid degradation
pory00230  Purine metabolism
pory00250  Alanine, aspartate and glutamate metabolism
pory00260  Glycine, serine and threonine metabolism
pory00620  Pyruvate metabolism
pory00710  Carbon fixation by Calvin cycle
pory00750  Vitamin B6 metabolism
pory00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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