KEGG   PATHWAY: ppoy00020
Entry
ppoy00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus polymyxa Sb3-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppoy00020  Citrate cycle (TCA cycle)
ppoy00020

Module
ppoy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppoy00020]
ppoy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppoy00020]
ppoy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppoy00020]
ppoy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppoy00020]
Other DBs
GO: 0006099
Organism
Paenibacillus polymyxa Sb3-1 [GN:ppoy]
Gene
RE92_03880  citrate synthase [KO:K01659] [EC:2.3.3.5]
RE92_07990  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
RE92_03875  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RE92_04920  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
RE92_04915  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
RE92_21740  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RE92_23205  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RE92_08585  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RE92_02475  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
RE92_02480  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
RE92_16875  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
RE92_16880  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
RE92_16870  succinate dehydrogenase [KO:K00241]
RE92_23670  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RE92_03870  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RE92_12105  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
RE92_23190  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
RE92_23195  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
RE92_23200  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
RE92_21865  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
RE92_21860  ferredoxin [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppoy00010  Glycolysis / Gluconeogenesis
ppoy00053  Ascorbate and aldarate metabolism
ppoy00061  Fatty acid biosynthesis
ppoy00071  Fatty acid degradation
ppoy00190  Oxidative phosphorylation
ppoy00220  Arginine biosynthesis
ppoy00250  Alanine, aspartate and glutamate metabolism
ppoy00280  Valine, leucine and isoleucine degradation
ppoy00350  Tyrosine metabolism
ppoy00470  D-Amino acid metabolism
ppoy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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