KEGG   PATHWAY: ppuh00020
Entry
ppuh00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas putida HB3267
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppuh00020  Citrate cycle (TCA cycle)
ppuh00020

Module
ppuh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppuh00020]
ppuh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppuh00020]
ppuh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppuh00020]
ppuh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppuh00020]
ppuh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppuh00020]
Other DBs
GO: 0006099
Organism
Pseudomonas putida HB3267 [GN:ppuh]
Gene
B479_17890  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
B479_09490  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
B479_08190  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
B479_09510  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B479_17020  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B479_17025  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B479_17865  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
B479_17860  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
B479_26565  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
B479_17855  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
B479_18925  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
B479_17845  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
B479_17850  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
B479_01105  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
B479_17875  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B479_17870  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B479_17885  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
B479_17880  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
B479_21600  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
B479_05035  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
B479_06770  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
B479_03725  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B479_04250  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
B479_14875  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
B479_19745  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
B479_08225  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
B479_26470  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
B479_26465  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
B479_01700  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
B479_02175  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
B479_03275  acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
B479_02170  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppuh00010  Glycolysis / Gluconeogenesis
ppuh00053  Ascorbate and aldarate metabolism
ppuh00061  Fatty acid biosynthesis
ppuh00071  Fatty acid degradation
ppuh00190  Oxidative phosphorylation
ppuh00220  Arginine biosynthesis
ppuh00250  Alanine, aspartate and glutamate metabolism
ppuh00280  Valine, leucine and isoleucine degradation
ppuh00350  Tyrosine metabolism
ppuh00470  D-Amino acid metabolism
ppuh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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