KEGG   PATHWAY: psap00630
Entry
psap00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paracoccus saliphilus
Class
Metabolism; Carbohydrate metabolism
Pathway map
psap00630  Glyoxylate and dicarboxylate metabolism
psap00630

Module
psap_M00373  Ethylmalonyl pathway [PATH:psap00630]
psap_M00621  Glycine cleavage system [PATH:psap00630]
psap_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:psap00630]
Other DBs
GO: 0046487 0043648
Organism
Paracoccus saliphilus [GN:psap]
Gene
JHX88_06265  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
JHX88_13255  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
JHX88_02870  malate synthase G [KO:K01638] [EC:2.3.3.9]
JHX88_13550  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JHX88_12645  citrate synthase [KO:K01647] [EC:2.3.3.1]
JHX88_08405  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JHX88_17875  sucD; succinate--CoA ligase subunit alpha [KO:K08692] [EC:6.2.1.9]
JHX88_20295  sucD; succinate--CoA ligase subunit alpha [KO:K08692] [EC:6.2.1.9]
JHX88_17880  malate--CoA ligase subunit beta [KO:K14067] [EC:6.2.1.9]
JHX88_20300  malate--CoA ligase subunit beta [KO:K14067] [EC:6.2.1.9]
JHX88_01010  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JHX88_01605  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
JHX88_13275  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
JHX88_13980  thiolase family protein [KO:K00626] [EC:2.3.1.9]
JHX88_14960  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
JHX88_18880  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JHX88_19975  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
JHX88_18885  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
JHX88_10115  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
JHX88_04440  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
JHX88_16995  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
JHX88_04430  protein meaA [KO:K14447] [EC:5.4.99.63]
JHX88_05830  acyl-CoA/acyl-ACP dehydrogenase [KO:K14448] [EC:1.3.8.12]
JHX88_13525  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
JHX88_01975  L-malyl-CoA/beta-methylmalyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
JHX88_17895  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
JHX88_20315  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
JHX88_13540  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
JHX88_11670  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
JHX88_11645  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
JHX88_11690  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
JHX88_01355  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
JHX88_01360  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
JHX88_01365  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
JHX88_09220  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
JHX88_12425  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
JHX88_19535  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
JHX88_19800  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
JHX88_00295  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
JHX88_09120  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
JHX88_15410  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
JHX88_05840  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
JHX88_08080  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
JHX88_01085  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JHX88_02725  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JHX88_15920  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JHX88_18635  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
JHX88_19725  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JHX88_20435  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
JHX88_06305  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
JHX88_17860  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
JHX88_20280  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
JHX88_20560  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
JHX88_20395  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
JHX88_20400  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
JHX88_20570  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
JHX88_10845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHX88_13600  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHX88_14170  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHX88_20565  gcvH; glycine cleavage system protein GcvH [KO:K02437]
JHX88_17890  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
JHX88_20320  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
JHX88_04725  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
JHX88_14345  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
JHX88_00505  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
JHX88_00520  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
JHX88_14355  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
JHX88_00525  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
JHX88_00510  4Fe-4S dicluster domain-containing protein [KO:K00124]
JHX88_14360  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
JHX88_00515  formate dehydrogenase subunit gamma [KO:K00127]
JHX88_14365  formate dehydrogenase subunit gamma [KO:K00127]
JHX88_20420  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
JHX88_21085  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
JHX88_19395  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
JHX88_19390  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
psap00010  Glycolysis / Gluconeogenesis
psap00020  Citrate cycle (TCA cycle)
psap00030  Pentose phosphate pathway
psap00053  Ascorbate and aldarate metabolism
psap00071  Fatty acid degradation
psap00230  Purine metabolism
psap00250  Alanine, aspartate and glutamate metabolism
psap00260  Glycine, serine and threonine metabolism
psap00620  Pyruvate metabolism
psap00710  Carbon fixation by Calvin cycle
psap00750  Vitamin B6 metabolism
psap00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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