KEGG   PATHWAY: psen00020
Entry
psen00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoalteromonas sp. NC201
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psen00020  Citrate cycle (TCA cycle)
psen00020

Module
psen_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psen00020]
psen_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psen00020]
psen_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psen00020]
psen_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psen00020]
psen_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psen00020]
Other DBs
GO: 0006099
Organism
Pseudoalteromonas sp. NC201 [GN:psen]
Gene
PNC201_07985  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
PNC201_21060  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
PNC201_01430  acn; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
PNC201_00655  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PNC201_09460  icd1; Isocitrate dehydrogenase [NADP] 2 [KO:K00031] [EC:1.1.1.42]
PNC201_19395  icd2; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
PNC201_08010  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PNC201_08015  sucB1; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
PNC201_03850  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PNC201_20110  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PNC201_08025  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
PNC201_08020  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
PNC201_08000  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PNC201_08005  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PNC201_07990  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
PNC201_07995  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
PNC201_06175  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
PNC201_00190  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
PNC201_13700  mdh2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PNC201_16470  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
PNC201_03840  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
PNC201_03845  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psen00010  Glycolysis / Gluconeogenesis
psen00053  Ascorbate and aldarate metabolism
psen00061  Fatty acid biosynthesis
psen00071  Fatty acid degradation
psen00190  Oxidative phosphorylation
psen00220  Arginine biosynthesis
psen00250  Alanine, aspartate and glutamate metabolism
psen00280  Valine, leucine and isoleucine degradation
psen00350  Tyrosine metabolism
psen00470  D-Amino acid metabolism
psen00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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