KEGG   PATHWAY: pvu00260
Entry
pvu00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Phaseolus vulgaris (common bean)
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
pvu00260  Glycine, serine and threonine metabolism
pvu00260

Module
pvu_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pvu00260]
pvu_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:pvu00260]
pvu_M00555  Betaine biosynthesis, choline => betaine [PATH:pvu00260]
pvu_M00621  Glycine cleavage system [PATH:pvu00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Phaseolus vulgaris (common bean) [GN:pvu]
Gene
PHAVU_004G070100g  hypothetical protein [KO:K00928] [EC:2.7.2.4]
PHAVU_001G265600g  hypothetical protein [KO:K12524] [EC:2.7.2.4 1.1.1.3]
PHAVU_011G012000g  hypothetical protein [KO:K12524] [EC:2.7.2.4 1.1.1.3]
PHAVU_002G323900g  hypothetical protein [KO:K00133] [EC:1.2.1.11]
PHAVU_008G292300g  hypothetical protein [KO:K00872] [EC:2.7.1.39]
PHAVU_005G156300g  hypothetical protein [KO:K01733] [EC:4.2.3.1]
PHAVU_003G133700g  hypothetical protein [KO:K01733] [EC:4.2.3.1]
PHAVU_006G105400g  hypothetical protein [KO:K01620] [EC:4.1.2.48]
PHAVU_007G122200g  hypothetical protein [KO:K01620] [EC:4.1.2.48]
PHAVU_009G0264000  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_006G168300g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_003G286600g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_006G216000g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_001G266600g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_008G184200g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_002G313300g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_003G051100g  hypothetical protein [KO:K00600] [EC:2.1.2.1]
PHAVU_006G029100g  hypothetical protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
PHAVU_007G019300g  hypothetical protein [KO:K15893] [EC:1.1.1.29]
PHAVU_010G087100g  hypothetical protein [KO:K15919] [EC:1.1.1.79 1.1.1.81]
PHAVU_010G087300g  hypothetical protein [KO:K15919] [EC:1.1.1.79 1.1.1.81]
PHAVU_008G171600g  hypothetical protein [KO:K01834] [EC:5.4.2.11]
PHAVU_009G029000g  hypothetical protein [KO:K01834] [EC:5.4.2.11]
PHAVU_002G261600g  hypothetical protein [KO:K01834] [EC:5.4.2.11]
PHAVU_003G246200g  hypothetical protein [KO:K15634] [EC:5.4.2.11]
PHAVU_003G246100g  hypothetical protein [KO:K15634] [EC:5.4.2.11]
PHAVU_008G077900g  hypothetical protein [KO:K15633] [EC:5.4.2.12]
PHAVU_005G173200g  hypothetical protein [KO:K15918] [EC:2.7.1.31]
PHAVU_008G256300g  hypothetical protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PHAVU_007G040600g  hypothetical protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PHAVU_003G269100g  hypothetical protein [KO:K00831] [EC:2.6.1.52]
PHAVU_002G115000g  hypothetical protein [KO:K00831] [EC:2.6.1.52]
PHAVU_010G007300g  hypothetical protein [KO:K01079] [EC:3.1.3.3]
PHAVU_009G174800g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_003G204000g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_002G150400g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_003G064200g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_003G106200g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_007G056200g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_007G056400g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_007G056500g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_007G056600g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_005G023500g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_005G023600g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_003G040500g  hypothetical protein [KO:K00276] [EC:1.4.3.21]
PHAVU_001G035500g  hypothetical protein [KO:K00281] [EC:1.4.4.2]
PHAVU_009G077400g  hypothetical protein [KO:K00281] [EC:1.4.4.2]
PHAVU_003G080400g  hypothetical protein [KO:K00605] [EC:2.1.2.10]
PHAVU_006G148700g  hypothetical protein [KO:K00605] [EC:2.1.2.10]
PHAVU_003G112300g  hypothetical protein [KO:K00382] [EC:1.8.1.4]
PHAVU_003G118800g  hypothetical protein [KO:K00382] [EC:1.8.1.4]
PHAVU_009G254900g  hypothetical protein [KO:K00382] [EC:1.8.1.4]
PHAVU_003G122000g  hypothetical protein [KO:K02437]
PHAVU_002G006000g  hypothetical protein [KO:K02437]
PHAVU_007G233300g  hypothetical protein [KO:K02437]
PHAVU_010G078600g  hypothetical protein [KO:K00827] [EC:2.6.1.44 2.6.1.40]
PHAVU_002G263500g  hypothetical protein [KO:K00827] [EC:2.6.1.44 2.6.1.40]
PHAVU_008G0876000  hypothetical protein [KO:K00827] [EC:2.6.1.44 2.6.1.40]
PHAVU_002G150800g  hypothetical protein [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
PHAVU_011G131100g  hypothetical protein [KO:K00499] [EC:1.14.15.7]
PHAVU_003G1401001  hypothetical protein [KO:K00499] [EC:1.14.15.7]
PHAVU_009G182300g  hypothetical protein [KO:K00130] [EC:1.2.1.8]
PHAVU_003G1967000  hypothetical protein [KO:K00130] [EC:1.2.1.8]
PHAVU_009G226700g  hypothetical protein [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
PHAVU_009G102000g  hypothetical protein [KO:K00306] [EC:1.5.3.1 1.5.3.7]
PHAVU_007G225400g  hypothetical protein [KO:K01754] [EC:4.3.1.19]
PHAVU_002G288200g  hypothetical protein [KO:K12235] [EC:5.1.1.18]
PHAVU_001G156200g  hypothetical protein [KO:K01695] [EC:4.2.1.20]
PHAVU_002G048100g  hypothetical protein [KO:K01696] [EC:4.2.1.20]
PHAVU_006G037600g  hypothetical protein [KO:K01696] [EC:4.2.1.20]
PHAVU_006G040500g  hypothetical protein [KO:K01696] [EC:4.2.1.20]
PHAVU_004G048300g  hypothetical protein [KO:K06001] [EC:4.2.1.20]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
pvu00010  Glycolysis / Gluconeogenesis
pvu00020  Citrate cycle (TCA cycle)
pvu00230  Purine metabolism
pvu00250  Alanine, aspartate and glutamate metabolism
pvu00270  Cysteine and methionine metabolism
pvu00290  Valine, leucine and isoleucine biosynthesis
pvu00300  Lysine biosynthesis
pvu00330  Arginine and proline metabolism
pvu00460  Cyanoamino acid metabolism
pvu00470  D-Amino acid metabolism
pvu00564  Glycerophospholipid metabolism
pvu00600  Sphingolipid metabolism
pvu00620  Pyruvate metabolism
pvu00630  Glyoxylate and dicarboxylate metabolism
pvu00640  Propanoate metabolism
pvu00860  Porphyrin metabolism
pvu00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

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