KEGG   PATHWAY: pvu00270
Entry
pvu00270                    Pathway                                
Name
Cysteine and methionine metabolism - Phaseolus vulgaris (common bean)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
pvu00270  Cysteine and methionine metabolism
pvu00270

Module
pvu_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pvu00270]
pvu_M00034  Methionine salvage pathway [PATH:pvu00270]
pvu_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:pvu00270]
Other DBs
GO: 0006534 0006555
Organism
Phaseolus vulgaris (common bean) [GN:pvu]
Gene
PHAVU_010G110600g  hypothetical protein [KO:K00640] [EC:2.3.1.30]
PHAVU_003G269000g  hypothetical protein [KO:K00640] [EC:2.3.1.30]
PHAVU_008G277800g  hypothetical protein [KO:K00640] [EC:2.3.1.30]
PHAVU_002G114700g  hypothetical protein [KO:K00640] [EC:2.3.1.30]
PHAVU_001G170600g  hypothetical protein [KO:K00640] [EC:2.3.1.30]
PHAVU_006G055200g  hypothetical protein [KO:K00640] [EC:2.3.1.30]
PHAVU_002G045200g  hypothetical protein [KO:K01738] [EC:2.5.1.47]
PHAVU_008G278600g  hypothetical protein [KO:K01738] [EC:2.5.1.47]
PHAVU_007G185100g  hypothetical protein [KO:K01738] [EC:2.5.1.47]
PHAVU_007G185200g  hypothetical protein [KO:K01738] [EC:2.5.1.47]
PHAVU_007G057600g  hypothetical protein [KO:K01738] [EC:2.5.1.47]
PHAVU_006G099100g  hypothetical protein [KO:K01738] [EC:2.5.1.47]
PHAVU_003G060200g  hypothetical protein [KO:K01738] [EC:2.5.1.47]
PHAVU_008G061100g  hypothetical protein [KO:K13034] [EC:2.5.1.47 4.4.1.9]
PHAVU_001G125400g  hypothetical protein [KO:K01760] [EC:4.4.1.13]
PHAVU_007G0603001  hypothetical protein [KO:K00547] [EC:2.1.1.10]
PHAVU_001G153900g  hypothetical protein [KO:K00547] [EC:2.1.1.10]
PHAVU_003G036100g  hypothetical protein [KO:K00547] [EC:2.1.1.10]
PHAVU_005G048200g  hypothetical protein [KO:K00549] [EC:2.1.1.14]
PHAVU_004G051600g  hypothetical protein [KO:K00549] [EC:2.1.1.14]
PHAVU_001G113800g  hypothetical protein [KO:K00549] [EC:2.1.1.14]
PHAVU_006G007600g  hypothetical protein [KO:K00549] [EC:2.1.1.14]
PHAVU_001G179500g  hypothetical protein [KO:K00789] [EC:2.5.1.6]
PHAVU_007G210700g  hypothetical protein [KO:K00789] [EC:2.5.1.6]
PHAVU_003G120000g  hypothetical protein [KO:K00789] [EC:2.5.1.6]
PHAVU_003G120300g  hypothetical protein [KO:K00789] [EC:2.5.1.6]
PHAVU_007G148000g  hypothetical protein [KO:K00789] [EC:2.5.1.6]
PHAVU_007G148100g  hypothetical protein [KO:K00789] [EC:2.5.1.6]
PHAVU_001G2166000  hypothetical protein [KO:K00789] [EC:2.5.1.6]
PHAVU_001G216700g  hypothetical protein [KO:K00789] [EC:2.5.1.6]
PHAVU_001G222800g  hypothetical protein [KO:K00789] [EC:2.5.1.6]
PHAVU_008G022100g  hypothetical protein [KO:K01611] [EC:4.1.1.50]
PHAVU_006G157800g  hypothetical protein [KO:K01611] [EC:4.1.1.50]
PHAVU_003G097900g  hypothetical protein [KO:K01611] [EC:4.1.1.50]
PHAVU_003G044200g  hypothetical protein [KO:K01611] [EC:4.1.1.50]
PHAVU_002G072200g  hypothetical protein [KO:K00797] [EC:2.5.1.16]
PHAVU_003G199000g  hypothetical protein [KO:K00797] [EC:2.5.1.16]
PHAVU_003G052600g  hypothetical protein [KO:K00797] [EC:2.5.1.16]
PHAVU_009G054800g  hypothetical protein [KO:K00797] [EC:2.5.1.16]
PHAVU_001G225000g  hypothetical protein [KO:K05953] [EC:2.5.1.43]
PHAVU_005G052500g  hypothetical protein [KO:K05953] [EC:2.5.1.43]
PHAVU_006G117300g  hypothetical protein [KO:K05953] [EC:2.5.1.43]
PHAVU_009G000600g  hypothetical protein [KO:K01244] [EC:3.2.2.16]
PHAVU_009G0007001  hypothetical protein [KO:K01244] [EC:3.2.2.16]
PHAVU_007G040700g  hypothetical protein [KO:K00899] [EC:2.7.1.100]
PHAVU_007G040800g  hypothetical protein [KO:K00899] [EC:2.7.1.100]
PHAVU_009G226400g  hypothetical protein [KO:K08963] [EC:5.3.1.23]
PHAVU_005G072900g  hypothetical protein [KO:K16054] [EC:4.2.1.109 3.1.3.77]
PHAVU_007G061500g  hypothetical protein [KO:K08967] [EC:1.13.11.53 1.13.11.54]
PHAVU_007G061700g  hypothetical protein [KO:K08967] [EC:1.13.11.53 1.13.11.54]
PHAVU_009G122900g  hypothetical protein [KO:K23977] [EC:2.6.1.117]
PHAVU_009G122800g  hypothetical protein [KO:K23977] [EC:2.6.1.117]
PHAVU_011G157500g  hypothetical protein [KO:K00815] [EC:2.6.1.5]
PHAVU_005G101300g  hypothetical protein [KO:K00815] [EC:2.6.1.5]
PHAVU_005G173300g  hypothetical protein [KO:K00837] [EC:2.6.1.-]
PHAVU_001G082000g  hypothetical protein [KO:K01761] [EC:4.4.1.11]
PHAVU_004G090200g  hypothetical protein [KO:K01761] [EC:4.4.1.11]
PHAVU_003G273100g  hypothetical protein [KO:K00558] [EC:2.1.1.37]
PHAVU_002G113900g  hypothetical protein [KO:K00558] [EC:2.1.1.37]
PHAVU_004G176100g  hypothetical protein [KO:K00558] [EC:2.1.1.37]
PHAVU_004G133200g  hypothetical protein [KO:K00558] [EC:2.1.1.37]
PHAVU_006G090600g  hypothetical protein [KO:K17398] [EC:2.1.1.37]
PHAVU_001G266500g  hypothetical protein [KO:K01251] [EC:3.13.2.1]
PHAVU_003G051200g  hypothetical protein [KO:K01251] [EC:3.13.2.1]
PHAVU_002G293000g  hypothetical protein [KO:K20772] [EC:4.4.1.14]
PHAVU_010G103900g  hypothetical protein [KO:K20772] [EC:4.4.1.14]
PHAVU_002G159800g  hypothetical protein [KO:K20772] [EC:4.4.1.14]
PHAVU_008G058400g  hypothetical protein [KO:K20772] [EC:4.4.1.14]
PHAVU_009G074800g  hypothetical protein [KO:K01762] [EC:4.4.1.14]
PHAVU_004G172300g  hypothetical protein [KO:K01762] [EC:4.4.1.14]
PHAVU_003G232400g  hypothetical protein [KO:K01762] [EC:4.4.1.14]
PHAVU_002G008900g  hypothetical protein [KO:K01762] [EC:4.4.1.14]
PHAVU_002G305000g  hypothetical protein [KO:K01762] [EC:4.4.1.14]
PHAVU_009G129500g  hypothetical protein [KO:K05933] [EC:1.14.17.4]
PHAVU_002G326600g  hypothetical protein [KO:K05933] [EC:1.14.17.4]
PHAVU_008G213800g  hypothetical protein [KO:K05933] [EC:1.14.17.4]
PHAVU_003G082300g  hypothetical protein [KO:K05933] [EC:1.14.17.4]
PHAVU_002G304200g  hypothetical protein [KO:K05933] [EC:1.14.17.4]
PHAVU_006G144900g  hypothetical protein [KO:K05933] [EC:1.14.17.4]
PHAVU_008G214200g  hypothetical protein [KO:K05933] [EC:1.14.17.4]
PHAVU_007G135600g  hypothetical protein [KO:K05933] [EC:1.14.17.4]
PHAVU_004G070100g  hypothetical protein [KO:K00928] [EC:2.7.2.4]
PHAVU_001G265600g  hypothetical protein [KO:K12524] [EC:2.7.2.4 1.1.1.3]
PHAVU_011G012000g  hypothetical protein [KO:K12524] [EC:2.7.2.4 1.1.1.3]
PHAVU_002G323900g  hypothetical protein [KO:K00133] [EC:1.2.1.11]
PHAVU_008G038100g  hypothetical protein [KO:K01739] [EC:2.5.1.48]
PHAVU_002G217400g  hypothetical protein [KO:K00826] [EC:2.6.1.42]
PHAVU_002G217500g  hypothetical protein [KO:K00826] [EC:2.6.1.42]
PHAVU_009G075100g  hypothetical protein [KO:K00826] [EC:2.6.1.42]
PHAVU_002G008700g  hypothetical protein [KO:K00826] [EC:2.6.1.42]
PHAVU_010G078600g  hypothetical protein [KO:K00827] [EC:2.6.1.44 2.6.1.40]
PHAVU_002G263500g  hypothetical protein [KO:K00827] [EC:2.6.1.44 2.6.1.40]
PHAVU_008G0876000  hypothetical protein [KO:K00827] [EC:2.6.1.44 2.6.1.40]
PHAVU_002G289200g  hypothetical protein [KO:K01919] [EC:6.3.2.2]
PHAVU_002G157600g  hypothetical protein [KO:K01919] [EC:6.3.2.2]
PHAVU_006G094500g  hypothetical protein [KO:K21456] [EC:6.3.2.3]
PHAVU_006G094700g  hypothetical protein [KO:K21456] [EC:6.3.2.3]
PHAVU_006G094600g  hypothetical protein [KO:K21456] [EC:6.3.2.3]
PHAVU_009G106800g  hypothetical protein [KO:K14454] [EC:2.6.1.1]
PHAVU_011G127800g  hypothetical protein [KO:K14455] [EC:2.6.1.1]
PHAVU_010G067200g  hypothetical protein [KO:K14455] [EC:2.6.1.1]
PHAVU_006G063400g  hypothetical protein [KO:K14455] [EC:2.6.1.1]
PHAVU_001G0470000  hypothetical protein [KO:K00811] [EC:2.6.1.1]
PHAVU_005G050400g  hypothetical protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
PHAVU_003G219400g  hypothetical protein [KO:K00016] [EC:1.1.1.27]
PHAVU_002G062000g  hypothetical protein [KO:K00016] [EC:1.1.1.27]
PHAVU_002G332800g  hypothetical protein [KO:K05396] [EC:4.4.1.15]
PHAVU_001G256400g  hypothetical protein [KO:K05396] [EC:4.4.1.15]
PHAVU_007G204900g  hypothetical protein [KO:K22207] [EC:4.4.1.28]
PHAVU_007G209500g  hypothetical protein [KO:K22207] [EC:4.4.1.28]
PHAVU_001G222200g  hypothetical protein [KO:K22207] [EC:4.4.1.28]
PHAVU_010G055700g  hypothetical protein [KO:K00025] [EC:1.1.1.37]
PHAVU_007G273500g  hypothetical protein [KO:K00025] [EC:1.1.1.37]
PHAVU_011G159000g  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PHAVU_002G216800g  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PHAVU_003G189700g  hypothetical protein [KO:K00026] [EC:1.1.1.37]
PHAVU_001G1075001  hypothetical protein [KO:K22846] [EC:2.5.1.144]
PHAVU_008G256300g  hypothetical protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PHAVU_007G040600g  hypothetical protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
PHAVU_003G269100g  hypothetical protein [KO:K00831] [EC:2.6.1.52]
PHAVU_002G115000g  hypothetical protein [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
pvu00010  Glycolysis / Gluconeogenesis
pvu00250  Alanine, aspartate and glutamate metabolism
pvu00260  Glycine, serine and threonine metabolism
pvu00290  Valine, leucine and isoleucine biosynthesis
pvu00430  Taurine and hypotaurine metabolism
pvu00480  Glutathione metabolism
pvu00620  Pyruvate metabolism
pvu00640  Propanoate metabolism
pvu00770  Pantothenate and CoA biosynthesis
pvu00900  Terpenoid backbone biosynthesis
pvu00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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