KEGG   PATHWAY: pwi00020
Entry
pwi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoxanthomonas winnipegensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pwi00020  Citrate cycle (TCA cycle)
pwi00020

Module
pwi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pwi00020]
pwi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pwi00020]
pwi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pwi00020]
pwi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pwi00020]
Other DBs
GO: 0006099
Organism
Pseudoxanthomonas winnipegensis [GN:pwi]
Gene
MWN52_05530  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
MWN52_14545  citrate synthase [KO:K01647] [EC:2.3.3.1]
MWN52_05545  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
MWN52_09255  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MWN52_09270  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MWN52_00380  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MWN52_06185  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MWN52_11240  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MWN52_11245  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MWN52_02470  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MWN52_11250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MWN52_06825  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MWN52_06820  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MWN52_10735  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MWN52_10730  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MWN52_10745  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MWN52_10740  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
MWN52_10850  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MWN52_11200  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MWN52_05490  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MWN52_12875  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
MWN52_01905  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
MWN52_02465  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pwi00010  Glycolysis / Gluconeogenesis
pwi00053  Ascorbate and aldarate metabolism
pwi00061  Fatty acid biosynthesis
pwi00071  Fatty acid degradation
pwi00190  Oxidative phosphorylation
pwi00220  Arginine biosynthesis
pwi00250  Alanine, aspartate and glutamate metabolism
pwi00280  Valine, leucine and isoleucine degradation
pwi00350  Tyrosine metabolism
pwi00470  D-Amino acid metabolism
pwi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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