KEGG   PATHWAY: rcp00020
Entry
rcp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodobacter capsulatus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rcp00020  Citrate cycle (TCA cycle)
rcp00020

Module
rcp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rcp00020]
rcp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rcp00020]
rcp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rcp00020]
rcp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rcp00020]
rcp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rcp00020]
Other DBs
GO: 0006099
Organism
Rhodobacter capsulatus [GN:rcp]
Gene
RCAP_rcc02364  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RCAP_rcc03348  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
RCAP_rcc02150  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
RCAP_rcc01887  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
RCAP_rcc00724  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
RCAP_rcc00725  sucB; dihydrolipoyllysine-residue succinyltransferase (succinyl-transferring), E2 component [KO:K00658] [EC:2.3.1.61]
RCAP_rcc01556  lpdA2; dihydrolipoyl dehydrogenase-2 [KO:K00382] [EC:1.8.1.4]
RCAP_rcc00726  lpdA1; dihydrolipoyl dehydrogenase-1 [KO:K00382] [EC:1.8.1.4]
RCAP_rcc00721  sucD; succinyl-CoA synthetase (ADP-forming), alpha subunit [KO:K01902] [EC:6.2.1.5]
RCAP_rcc00720  sucC; succinyl-CoA synthetase (ADP-forming), beta subunit [KO:K01903] [EC:6.2.1.5]
RCAP_rcc00733  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RCAP_rcc00736  sdhB; succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RCAP_rcc00731  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
RCAP_rcc00732  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
RCAP_rcc02826  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RCAP_rcc00718  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RCAP_rcc01203  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
RCAP_rcc02837  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
RCAP_rcc01705  pdhA; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase (acetyl-transferring), alpha subunit [KO:K00161] [EC:1.2.4.1]
RCAP_rcc01704  pdhB; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase (acetyl-transferring), beta subunit [KO:K00162] [EC:1.2.4.1]
RCAP_rcc01703  pdhC; pyruvate dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
RCAP_rcc01728  nifJ; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rcp00010  Glycolysis / Gluconeogenesis
rcp00053  Ascorbate and aldarate metabolism
rcp00061  Fatty acid biosynthesis
rcp00071  Fatty acid degradation
rcp00190  Oxidative phosphorylation
rcp00220  Arginine biosynthesis
rcp00250  Alanine, aspartate and glutamate metabolism
rcp00280  Valine, leucine and isoleucine degradation
rcp00350  Tyrosine metabolism
rcp00470  D-Amino acid metabolism
rcp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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