KEGG   PATHWAY: rcu00240
Entry
rcu00240                    Pathway                                
Name
Pyrimidine metabolism - Ricinus communis (castor bean)
Class
Metabolism; Nucleotide metabolism
Pathway map
rcu00240  Pyrimidine metabolism
rcu00240

Module
rcu_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:rcu00240]
rcu_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rcu00240]
rcu_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rcu00240]
rcu_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:rcu00240]
Other DBs
GO: 0006220 0006213
Organism
Ricinus communis (castor bean) [GN:rcu]
Gene
8285997  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
8262697  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
8287625  aspartate carbamoyltransferase, chloroplastic [KO:K00609] [EC:2.1.3.2]
8262046  dihydroorotase, mitochondrial isoform X1 [KO:K01465] [EC:3.5.2.3]
8262675  dihydroorotate dehydrogenase (quinone), mitochondrial isoform X1 [KO:K00254] [EC:1.3.5.2]
8270896  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
8266675  UMP-CMP kinase 3 isoform X2 [KO:K13800] [EC:2.7.4.14]
8281349  UMP-CMP kinase 3 isoform X2 [KO:K13800] [EC:2.7.4.14]
8266051  probable UMP-CMP kinase 2 [KO:K13800] [EC:2.7.4.14]
8259122  uridylate kinase isoform X2 [KO:K09903] [EC:2.7.4.22]
8288018  uncharacterized protein LOC8288018 [KO:K00940] [EC:2.7.4.6]
8266361  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
8263296  nucleoside diphosphate kinase B [KO:K00940] [EC:2.7.4.6]
8268694  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
8281804  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
8260949  apyrase 2 [KO:K14641] [EC:3.6.1.5]
8272539  venom phosphodiesterase 2 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
8258196  nudix hydrolase 25 isoform X2 [KO:K26955] [EC:3.6.1.17]
8284873  CTP synthase [KO:K01937] [EC:6.3.4.2]
8265151  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
8260365  CTP synthase [KO:K01937] [EC:6.3.4.2]
8271470  uridine/cytidine kinase UKL1, chloroplastic [KO:K00876] [EC:2.7.1.48]
8262266  uridine kinase-like protein 3 isoform X2 [KO:K00876] [EC:2.7.1.48]
8279103  uridine kinase-like protein 5 isoform X2 [KO:K00876] [EC:2.7.1.48]
8264617  inorganic pyrophosphatase TTM2 [KO:K00876] [EC:2.7.1.48]
8264570  inorganic pyrophosphatase TTM1 isoform X1 [KO:K00876] [EC:2.7.1.48]
8272562  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
8280933  5'-nucleotidase SurE isoform X2 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
8284711  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
8267175  uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
8269680  probable uridine nucleosidase 2 isoform X1 [KO:K01240] [EC:3.2.2.3]
8283888  uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
8261161  pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
8277603  7-methylguanosine phosphate-specific 5'-nucleotidase A [KO:K24242] [EC:3.1.3.91]
8272577  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
8283227  ribonucleoside-diphosphate reductase large subunit isoform X1 [KO:K10807] [EC:1.17.4.1]
8262003  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
8271445  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
8261479  ribonucleoside-diphosphate reductase small chain A isoform X1 [KO:K10808] [EC:1.17.4.1]
8284483  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
8266766  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
8263755  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
8264519  5'-deoxynucleotidase HDDC2 [KO:K07023] [EC:3.1.3.89]
8259345  5'-deoxynucleotidase HDDC2 isoform X1 [KO:K07023] [EC:3.1.3.89]
8277426  deoxycytidylate deaminase isoform X1 [KO:K01493] [EC:3.5.4.12]
8271785  thymidylate kinase isoform X2 [KO:K00943] [EC:2.7.4.9]
8288912  LOW QUALITY PROTEIN: deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
8284786  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
8284095  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
8285348  bifunctional dihydrofolate reductase-thymidylate synthase 1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
8275764  putative bifunctional dihydrofolate reductase-thymidylate synthase isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
8284766  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
8267755  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
8279067  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
rcu00030  Pentose phosphate pathway
rcu00220  Arginine biosynthesis
rcu00250  Alanine, aspartate and glutamate metabolism
rcu00280  Valine, leucine and isoleucine degradation
rcu00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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