KEGG   PATHWAY: rcu03030
Entry
rcu03030                    Pathway                                
Name
DNA replication - Ricinus communis (castor bean)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
rcu03030  DNA replication
rcu03030

Organism
Ricinus communis (castor bean) [GN:rcu]
Gene
8264544  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
8260798  DNA polymerase I A, chloroplastic/mitochondrial [KO:K02335] [EC:2.7.7.7]
8280087  replication protein A 70 kDa DNA-binding subunit E [KO:K07466]
8268447  replication protein A 70 kDa DNA-binding subunit A [KO:K07466]
8284426  replication protein A 70 kDa DNA-binding subunit B [KO:K07466]
8279783  proliferating cell nuclear antigen [KO:K04802]
8266680  DNA replication ATP-dependent helicase/nuclease JHS1 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
8274974  flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
8275235  DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
8289455  DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
8278457  DNA polymerase alpha subunit B [KO:K02321]
8287379  DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
8286771  probable DNA primase large subunit isoform X1 [KO:K02685]
8277728  DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
8267087  DNA polymerase delta small subunit [KO:K02328]
8288260  uncharacterized protein LOC8288260 isoform X1 [KO:K03504]
8284291  DNA polymerase delta subunit 4 [KO:K03505]
8277599  DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
8260279  DNA polymerase epsilon subunit B isoform X1 [KO:K02325] [EC:2.7.7.7]
8271925  DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
8285721  DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
8264134  DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
8284343  DNA replication licensing factor MCM4 isoform X2 [KO:K02212] [EC:5.6.2.3]
8262843  DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
8273210  DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
8267347  DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
8260297  replication protein A 32 kDa subunit B isoform X2 [KO:K10739]
8282067  LOW QUALITY PROTEIN: replication protein A 32 kDa subunit A [KO:K10739]
8263182  replication protein A 14 kDa subunit B [KO:K10740]
8281056  replication factor C subunit 1 isoform X3 [KO:K10754]
8265440  replication factor C subunit 2 [KO:K10755]
8271000  replication factor C subunit 2 isoform X2 [KO:K10755]
8277766  replication factor C subunit 3 [KO:K10756]
8286493  replication factor C subunit 3 [KO:K10756]
8277632  replication factor C subunit 5 [KO:K10756]
8273383  uncharacterized protein LOC8273383 isoform X2 [KO:K10756]
8277740  ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
8259306  ribonuclease H2 subunit B [KO:K10744]
8283082  ribonuclease H2 subunit C [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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