KEGG   PATHWAY: rkg03022
Entry
rkg03022                    Pathway                                
Name
Basal transcription factors - Rhinichthys klamathensis goyatoka (western speckled dace)
Class
Genetic Information Processing; Transcription
Pathway map
rkg03022  Basal transcription factors
rkg03022

Other DBs
GO: 0005668 0005669 0005672 0005673 0005674 0005675
Organism
Rhinichthys klamathensis goyatoka (western speckled dace) [GN:rkg]
Gene
130090951  gtf2a1l; TFIIA-alpha and beta-like factor [KO:K03122]
130096096  gtf2a1; transcription initiation factor IIA subunit 1 isoform X1 [KO:K03122]
130101541  gtf2a2; transcription initiation factor IIA subunit 2 [KO:K03123]
130070965  gtf2b; transcription initiation factor IIB [KO:K03124]
130089676  tbp; TATA-box-binding protein [KO:K03120]
130075332  tbpl1; TATA box-binding protein-like 1 [KO:K03120]
130089030  tbpl2; TATA box-binding protein-like 2 isoform X1 [KO:K03120]
130072608  taf1; transcription initiation factor TFIID subunit 1 isoform X1 [KO:K03125] [EC:2.3.1.48 2.7.11.1]
130090037  taf2; transcription initiation factor TFIID subunit 2 isoform X1 [KO:K03128]
130103944  taf7; transcription initiation factor TFIID subunit 7 [KO:K03132]
130075577  taf8; transcription initiation factor TFIID subunit 8 [KO:K14649]
130092562  taf3; transcription initiation factor TFIID subunit 3 [KO:K14650]
130094577  taf10; transcription initiation factor TFIID subunit 10 isoform X1 [KO:K03134]
130087294  taf5; transcription initiation factor TFIID subunit 5 [KO:K03130]
130070058  taf5l; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L [KO:K03130]
130104408  si:dkey-219c3.2; transcription initiation factor TFIID subunit 4 isoform X1 [KO:K03129]
130078083  transcription initiation factor TFIID subunit 4 [KO:K03129]
130097595  taf4b; transcription initiation factor TFIID subunit 4 [KO:K03129]
130104367  taf12; transcription initiation factor TFIID subunit 12 [KO:K03126]
130091386  taf6l; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L isoform X1 [KO:K03131]
130071261  taf6; transcription initiation factor TFIID subunit 6 [KO:K03131]
130095531  taf9; transcription initiation factor TFIID subunit 9 [KO:K14535]
130084377  taf11; transcription initiation factor TFIID subunit 11 [KO:K03135]
130076831  gtf2e1; general transcription factor IIE subunit 1 [KO:K03136]
130089569  gtf2e2; transcription initiation factor IIE subunit beta [KO:K03137]
130088417  gtf2f1; general transcription factor IIF subunit 1 isoform X1 [KO:K03138]
130075853  gtf2f2b; general transcription factor IIF subunit 2b [KO:K03139] [EC:5.6.2.-]
130105654  gtf2f2a; general transcription factor IIF subunit 2 isoform X1 [KO:K03139] [EC:5.6.2.-]
130106452  gtf2h1; general transcription factor IIH subunit 1 [KO:K03141]
130070745  gtf2h2; general transcription factor IIH subunit 2 [KO:K03142]
130069112  gtf2h3; general transcription factor IIH subunit 3 [KO:K03143]
130087924  gtf2h4; general transcription factor IIH subunit 4 [KO:K03144]
130101201  ercc3; general transcription and DNA repair factor IIH helicase subunit XPB [KO:K10843] [EC:5.6.2.4]
130096753  ercc2; general transcription and DNA repair factor IIH helicase subunit XPD [KO:K10844] [EC:5.6.2.3]
130091732  gtf2h5; general transcription factor IIH subunit 5 [KO:K10845]
130072471  cdk7; cyclin-dependent kinase 7 [KO:K02202] [EC:2.7.11.22 2.7.11.23]
130069319  mnat1; CDK-activating kinase assembly factor MAT1 [KO:K10842]
130069511  ccnh; cyclin-H [KO:K06634]
Reference
PMID:16858867
  Authors
Thomas MC, Chiang CM
  Title
The general transcription machinery and general cofactors.
  Journal
Crit Rev Biochem Mol Biol 41:105-78 (2006)
DOI:10.1080/10409230600648736
Reference
PMID:12516863
  Authors
Martinez E
  Title
Multi-protein complexes in eukaryotic gene transcription.
  Journal
Plant Mol Biol 50:925-47 (2002)
DOI:10.1023/A:1021258713850
Reference
PMID:19308322
  Authors
Cler E, Papai G, Schultz P, Davidson I
  Title
Recent advances in understanding the structure and function of general transcription factor TFIID.
  Journal
Cell Mol Life Sci 66:2123-34 (2009)
DOI:10.1007/s00018-009-0009-3
Reference
PMID:10838567
  Authors
Malik S, Roeder RG.
  Title
Transcriptional regulation through Mediator-like coactivators in yeast and metazoan cells.
  Journal
Trends Biochem Sci 25:277-283 (2000)
DOI:10.1016/S0968-0004(00)01596-6
Related
pathway
rkg03020  RNA polymerase
rkg03420  Nucleotide excision repair
KO pathway
ko03022   
LinkDB

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