KEGG   PATHWAY: rnc00020
Entry
rnc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ralstonia nicotianae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rnc00020  Citrate cycle (TCA cycle)
rnc00020

Module
rnc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rnc00020]
rnc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rnc00020]
rnc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rnc00020]
rnc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rnc00020]
rnc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rnc00020]
Other DBs
GO: 0006099
Organism
Ralstonia nicotianae [GN:rnc]
Gene
GO999_24160  hypothetical protein [KO:K01647] [EC:2.3.3.1]
GO999_06910  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
GO999_22715  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
GO999_23615  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GO999_06850  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GO999_23625  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GO999_04315  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GO999_20695  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GO999_10070  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GO999_10065  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GO999_07785  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GO999_10060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GO999_13845  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GO999_13850  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GO999_06895  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GO999_06900  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GO999_06885  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
GO999_06890  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
GO999_07080  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GO999_20420  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GO999_06875  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GO999_18100  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
GO999_16625  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
GO999_07770  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
GO999_07775  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rnc00010  Glycolysis / Gluconeogenesis
rnc00053  Ascorbate and aldarate metabolism
rnc00061  Fatty acid biosynthesis
rnc00071  Fatty acid degradation
rnc00190  Oxidative phosphorylation
rnc00220  Arginine biosynthesis
rnc00250  Alanine, aspartate and glutamate metabolism
rnc00280  Valine, leucine and isoleucine degradation
rnc00350  Tyrosine metabolism
rnc00470  D-Amino acid metabolism
rnc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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