KEGG   PATHWAY: rpop00630
Entry
rpop00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Roseibium porphyridii
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpop00630  Glyoxylate and dicarboxylate metabolism
rpop00630

Module
rpop_M00621  Glycine cleavage system [PATH:rpop00630]
rpop_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rpop00630]
Other DBs
GO: 0046487 0043648
Organism
Roseibium porphyridii [GN:rpop]
Gene
K1718_02405  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
K1718_03460  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
K1718_04085  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
K1718_21985  malate synthase G [KO:K01638] [EC:2.3.3.9]
K1718_26650  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K1718_14585  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
K1718_01610  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
K1718_01615  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
K1718_09385  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
K1718_03660  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K1718_09335  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K1718_03665  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K1718_21555  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
K1718_23555  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
K1718_01340  thiolase family protein [KO:K00626] [EC:2.3.1.9]
K1718_02715  bktB; beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
K1718_03005  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
K1718_03010  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
K1718_22935  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
K1718_03845  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
K1718_14460  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
K1718_03850  protein meaA [KO:K14447] [EC:5.4.99.63]
K1718_04170  acyl-CoA/acyl-ACP dehydrogenase [KO:K14448] [EC:1.3.8.12]
K1718_03370  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
K1718_15345  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
K1718_13785  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
K1718_13770  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
K1718_12335  methylmalonyl-CoA mutase family protein [KO:K01847] [EC:5.4.99.2]
K1718_12340  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
K1718_23180  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
K1718_23175  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
K1718_23160  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
K1718_01985  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
K1718_13730  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
K1718_13790  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
K1718_18280  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
K1718_00895  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
K1718_14285  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
K1718_23440  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
K1718_23450  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
K1718_06215  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
K1718_18765  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
K1718_21355  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
K1718_22665  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
K1718_22660  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
K1718_22680  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
K1718_10525  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
K1718_14815  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K1718_26610  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K1718_22675  gcvH; glycine cleavage system protein GcvH [KO:K02437]
K1718_25540  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
K1718_04160  glycerate kinase [KO:K00865] [EC:2.7.1.165]
K1718_27320  glycerate kinase [KO:K11529] [EC:2.7.1.165]
K1718_07055  aldehyde dehydrogenase family protein [KO:K07248] [EC:1.2.1.22 1.2.1.21]
K1718_10735  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
K1718_25335  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
K1718_06325  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
K1718_25340  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
K1718_06330  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
K1718_06335  formate dehydrogenase subunit gamma [KO:K00127]
K1718_21100  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
K1718_00890  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
K1718_06520  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rpop00010  Glycolysis / Gluconeogenesis
rpop00020  Citrate cycle (TCA cycle)
rpop00030  Pentose phosphate pathway
rpop00053  Ascorbate and aldarate metabolism
rpop00071  Fatty acid degradation
rpop00230  Purine metabolism
rpop00250  Alanine, aspartate and glutamate metabolism
rpop00260  Glycine, serine and threonine metabolism
rpop00620  Pyruvate metabolism
rpop00710  Carbon fixation by Calvin cycle
rpop00750  Vitamin B6 metabolism
rpop00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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