KEGG   PATHWAY: rsl00020
Entry
rsl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ralstonia solanacearum PSI07
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rsl00020  Citrate cycle (TCA cycle)
rsl00020

Module
rsl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rsl00020]
rsl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rsl00020]
rsl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rsl00020]
rsl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rsl00020]
rsl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rsl00020]
Other DBs
GO: 0006099
Organism
Ralstonia solanacearum PSI07 [GN:rsl]
Gene
RPSI07_1438  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
RPSI07_mp0086  prpC; 2-methylcitrate synthase (Methylcitrate synthase) (Citrate synthase 2) [KO:K01659] [EC:2.3.3.5]
RPSI07_1428  prpC; methylcitrate synthase (citrate synthase 2) [KO:K01659] [EC:2.3.3.5]
RPSI07_mp0134  acnA; aconitate hydratase 1 protein [KO:K27802] [EC:4.2.1.3 4.2.1.99]
RPSI07_1425  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
RPSI07_0976  icd; Isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
RPSI07_2096  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RPSI07_2095  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
RPSI07_1693  pdhL; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
RPSI07_2094  lpdA; Dihydrolipoamide dehydrogenase (component of pyruvate and 2-oxoglutarate dehydrogenases complexes) oxidoreductase protein [KO:K00382] [EC:1.8.1.4]
RPSI07_2801  sucD; Succinate-CoA ligase (GDP-forming), alpha subunit, NAD(P)-binding [KO:K01902] [EC:6.2.1.5]
RPSI07_2802  sucC; Succinate-CoA ligase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
RPSI07_1435  sdhA; succinate dehydrogenase, catalytic and NAD/flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RPSI07_1436  sdhB; succinate dehydrogenase, Fe-S protein [KO:K00240] [EC:1.3.5.1]
RPSI07_1433  sdhC; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD [KO:K00241]
RPSI07_1434  sdhD; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC [KO:K00242]
RPSI07_1475  fumA; Iron-dependent fumarate hydratase protein [KO:K01676] [EC:4.2.1.2]
RPSI07_mp1318  fumC; fumarase C (fumarate hydratase) [KO:K01679] [EC:4.2.1.2]
RPSI07_1431  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RPSI07_mp0750  mqo; malate:quinone oxidoreductase (Malate dehydrogenase [acceptor]) [KO:K00116] [EC:1.1.5.4]
RPSI07_3363  pckG; Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
RPSI07_1690  pdhA; pyruvate dehydrogenase, decarboxylase subunit E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
RPSI07_1691  pdhB; Dihydrolipoyllysine-residue succinyltransferase, component of pyruvate dehydrogenase complex (E2) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rsl00010  Glycolysis / Gluconeogenesis
rsl00053  Ascorbate and aldarate metabolism
rsl00061  Fatty acid biosynthesis
rsl00071  Fatty acid degradation
rsl00190  Oxidative phosphorylation
rsl00220  Arginine biosynthesis
rsl00250  Alanine, aspartate and glutamate metabolism
rsl00280  Valine, leucine and isoleucine degradation
rsl00350  Tyrosine metabolism
rsl00470  D-Amino acid metabolism
rsl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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