KEGG   PATHWAY: rso00020
Entry
rso00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ralstonia pseudosolanacearum GMI1000
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rso00020  Citrate cycle (TCA cycle)
rso00020

Module
rso_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rso00020]
rso_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rso00020]
rso_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rso00020]
rso_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rso00020]
rso_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rso00020]
Other DBs
GO: 0006099
Organism
Ralstonia pseudosolanacearum GMI1000 [GN:rso]
Gene
RSc1991  gltA; probable citrate synthase protein [KO:K01647] [EC:2.3.3.1]
RSc2003  acnA1; probable aconitate hydratase protein [KO:K01681] [EC:4.2.1.3]
RSp0330  acnA3; probable aconitate hydratase 1 protein [KO:K01681] [EC:4.2.1.3]
RSp0332  acnB; probable aconitate hydratase 2 transmembrane protein [KO:K01682] [EC:4.2.1.3 4.2.1.99]
RSc2490  icd; probable isocitrate dehydrogenase [nadp] oxidoreductase protein [KO:K00031] [EC:1.1.1.42]
RSc1269  odhA; probable oxoglutarate dehydrogenase oxidoreductase protein [KO:K00164] [EC:1.2.4.2]
RSp1364  sucA; probable 2-oxoglutarate dehydrogenase e1 decarboxylase component oxidoreductase protein [KO:K00164] [EC:1.2.4.2]
RSc1270  sucB; probable dihydrolipoamide succinyltransferase (component of 2-oxoglutarate dehydrogenase complex) protein [KO:K00658] [EC:2.3.1.61]
RSc1271  probable dihydrolipoamide dehydrogenase (component of pyruvate and 2-oxoglutarate dehydrogenases complexes) oxidoreductase protein [KO:K00382] [EC:1.8.1.4]
RSc1603  lpdA; probable dihydrolipoamide dehydrogenase (e3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) protein [KO:K00382] [EC:1.8.1.4]
RSc0555  sucD; probable succinyl-coa synthetase alpha chain protein [KO:K01902] [EC:6.2.1.5]
RSc0554  sucC; probable succinyl-coa synthetase beta chain (scs-beta) protein [KO:K01903] [EC:6.2.1.5]
RSc1994  sdhA; putative succinate dehydrogenase (flavoprotein subunit) oxidoreductase [KO:K00239] [EC:1.3.5.1]
RSc1993  sdhB; putative succinate dehydrogenase (iron-sulfur subunit) oxidoreductase protein [KO:K00240] [EC:1.3.5.1]
RSc1996  sdhC; putative transmembrane succinate dehydrogenase (cytochrome b-556 subunit) oxidoreductase protein [KO:K00241]
RSc1995  sdhD; putative transmembrane succinate dehydrogenase (hydrophobic membrane anchor subunit) oxidoreductase protein [KO:K00242]
RSc1955  fumA; probable fumarate hydratase protein [KO:K01676] [EC:4.2.1.2]
RSp1279  fumC; probable fumarate hydratase class II (fumarase c) protein [KO:K01679] [EC:4.2.1.2]
RSc1998  mdh; probable malate dehydrogenase . oxidoreductase protein [KO:K00024] [EC:1.1.1.37]
RSp0814  mqo; probable malate:quinone oxidoreductase (malatedehydrogenase [acceptor]) (mqo). oxidoreductase protein [KO:K00116] [EC:1.1.5.4]
RSc0017  pckG; probable phosphoenolpyruvate carboxykinase [gtp] (pepcarboxykinase) (phosphoenolpyruvate carboxylase) (pepck) protein [KO:K01596] [EC:4.1.1.32]
RSc1600  aceE; probable pyruvate dehydrogenase e1 component oxidoreductase protein [KO:K00163] [EC:1.2.4.1]
RSc1601  aceF; probable dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (e2) protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rso00010  Glycolysis / Gluconeogenesis
rso00053  Ascorbate and aldarate metabolism
rso00061  Fatty acid biosynthesis
rso00071  Fatty acid degradation
rso00190  Oxidative phosphorylation
rso00220  Arginine biosynthesis
rso00250  Alanine, aspartate and glutamate metabolism
rso00280  Valine, leucine and isoleucine degradation
rso00350  Tyrosine metabolism
rso00470  D-Amino acid metabolism
rso00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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