KEGG   PATHWAY: rte00020
Entry
rte00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rathayibacter tanaceti
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rte00020  Citrate cycle (TCA cycle)
rte00020

Module
rte_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rte00020]
rte_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rte00020]
rte_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rte00020]
rte_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rte00020]
rte_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rte00020]
Other DBs
GO: 0006099
Organism
Rathayibacter tanaceti [GN:rte]
Gene
GSU10_09720  citrate synthase [KO:K01647] [EC:2.3.3.1]
GSU10_07950  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01659] [EC:2.3.3.5]
GSU10_07615  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GSU10_11610  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GSU10_10210  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
GSU10_07700  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GSU10_00615  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GSU10_11660  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GSU10_11665  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GSU10_10680  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GSU10_10685  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GSU10_10670  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
GSU10_10675  succinate dehydrogenase [KO:K00242]
GSU10_10005  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
GSU10_02065  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GSU10_04075  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GSU10_10770  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
GSU10_08620  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
GSU10_07705  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rte00010  Glycolysis / Gluconeogenesis
rte00053  Ascorbate and aldarate metabolism
rte00061  Fatty acid biosynthesis
rte00071  Fatty acid degradation
rte00190  Oxidative phosphorylation
rte00220  Arginine biosynthesis
rte00250  Alanine, aspartate and glutamate metabolism
rte00280  Valine, leucine and isoleucine degradation
rte00350  Tyrosine metabolism
rte00470  D-Amino acid metabolism
rte00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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