KEGG   PATHWAY: salg00020
Entry
salg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella algae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
salg00020  Citrate cycle (TCA cycle)
salg00020

Module
salg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:salg00020]
salg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:salg00020]
salg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:salg00020]
salg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:salg00020]
salg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:salg00020]
Other DBs
GO: 0006099
Organism
Shewanella algae [GN:salg]
Gene
BS332_20940  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BS332_09225  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BS332_03015  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BS332_09690  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BS332_19475  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BS332_00380  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
BS332_20915  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BS332_20910  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BS332_09665  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BS332_20900  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BS332_20905  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BS332_20925  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BS332_20920  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BS332_20935  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BS332_20930  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BS332_04920  frdB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
BS332_04935  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K25996]
BS332_04930  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K25996]
BS332_03245  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
BS332_18525  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BS332_03780  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BS332_12465  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BS332_06290  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BS332_09655  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BS332_09660  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
salg00010  Glycolysis / Gluconeogenesis
salg00053  Ascorbate and aldarate metabolism
salg00061  Fatty acid biosynthesis
salg00071  Fatty acid degradation
salg00190  Oxidative phosphorylation
salg00220  Arginine biosynthesis
salg00250  Alanine, aspartate and glutamate metabolism
salg00280  Valine, leucine and isoleucine degradation
salg00350  Tyrosine metabolism
salg00470  D-Amino acid metabolism
salg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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