KEGG   PATHWAY: sbt00020
Entry
sbt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella baltica OS678
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbt00020  Citrate cycle (TCA cycle)
sbt00020

Module
sbt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbt00020]
sbt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sbt00020]
sbt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbt00020]
sbt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sbt00020]
sbt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbt00020]
Other DBs
GO: 0006099
Organism
Shewanella baltica OS678 [GN:sbt]
Gene
Sbal678_2636  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Sbal678_4175  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
Sbal678_4079  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Sbal678_2591  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Sbal678_1427  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Sbal678_2631  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Sbal678_2630  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Sbal678_4085  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sbal678_2628  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Sbal678_2629  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Sbal678_2633  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Sbal678_2632  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Sbal678_2635  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Sbal678_2634  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Sbal678_0658  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Sbal678_4109  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Sbal678_0657  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Sbal678_4108  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Sbal678_4111  succinate dehydrogenase cytochrome b subunit [KO:K25996]
Sbal678_0659  fumarate reductase cytochrome b-556 subunit [KO:K25996]
Sbal678_4110  succinate dehydrogenase cytochrome b subunit [KO:K25996]
Sbal678_3651  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
Sbal678_1990  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Sbal678_0545  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Sbal678_3839  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Sbal678_0154  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Sbal678_4087  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Sbal678_4086  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbt00010  Glycolysis / Gluconeogenesis
sbt00053  Ascorbate and aldarate metabolism
sbt00061  Fatty acid biosynthesis
sbt00071  Fatty acid degradation
sbt00190  Oxidative phosphorylation
sbt00220  Arginine biosynthesis
sbt00250  Alanine, aspartate and glutamate metabolism
sbt00280  Valine, leucine and isoleucine degradation
sbt00350  Tyrosine metabolism
sbt00470  D-Amino acid metabolism
sbt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system